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2ARJ
Asym. Unit
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Asym.Unit (177 KB)
Biol.Unit 1 (87 KB)
Biol.Unit 2 (87 KB)
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(1)
Title
:
CD8ALPHA-ALPHA IN COMPLEX WITH YTS 105.18 FAB
Authors
:
D. A. Shore, L. Teyton, R. A. Dwek, P. M. Rudd, I. A. Wilson
Date
:
19 Aug 05 (Deposition) - 30 May 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.88
Chains
:
Asym. Unit : A,B,H,L,Q,R
Biol. Unit 1: H,L,Q (1x)
Biol. Unit 2: A,B,R (1x)
Keywords
:
Protein-Protein Complex, Antibody Fab, Immune System, Immunoglobulin Domain
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Reference
:
D. A. Shore, L. Teyton, R. A. Dwek, P. M. Rudd, I. A. Wilson
Crystal Structure Of The Tcr Co-Receptor Cd8Alphaalpha In Complex With Monoclonal Antibody Yts 105. 18 Fab Fragment At 2. 88 A Resolution.
J. Mol. Biol. V. 358 347 2006
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_CD8A_MOUSE_001 (M78V, chain Q/R, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_CD8A_MOUSE_001
*
M
105
V
CD8A_MOUSE
---
---
Q/R
M
78
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
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All PROSITE Patterns/Profiles
1: IG_MHC (A:192-198,L:192-198)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
KACA_RAT
84-90
2
A:192-198
L:192-198
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(5, 10)
Info
All SCOP Domains
1a: SCOP_d2arjb2 (B:114-228)
1b: SCOP_d2arjh2 (H:114-228)
2a: SCOP_d2arja2 (A:108-211)
2b: SCOP_d2arjl2 (L:108-211)
3a: SCOP_d2arjq_ (Q:)
3b: SCOP_d2arjr_ (R:)
4a: SCOP_d2arjb1 (B:1-113)
4b: SCOP_d2arjh1 (H:1-113)
5a: SCOP_d2arja1 (A:1-107)
5b: SCOP_d2arjl1 (L:1-107)
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(5)
1a
d2arjb2
B:114-228
1b
d2arjh2
H:114-228
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(5)
2a
d2arja2
A:108-211
2b
d2arjl2
L:108-211
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
CD8
(10)
Mouse (Mus musculus) [TaxId: 10090]
(5)
3a
d2arjq_
Q:
3b
d2arjr_
R:
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(16)
4a
d2arjb1
B:1-113
4b
d2arjh1
H:1-113
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(9)
5a
d2arja1
A:1-107
5b
d2arjl1
L:1-107
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CATH Domains
(1, 10)
Info
all CATH domains
1a: CATH_2arjA02 (A:109-211)
1b: CATH_2arjL02 (L:109-211)
1c: CATH_2arjA01 (A:1-108)
1d: CATH_2arjL01 (L:1-108)
1e: CATH_2arjB02 (B:114-227)
1f: CATH_2arjH02 (H:114-227)
1g: CATH_2arjB01 (B:1-113)
1h: CATH_2arjH01 (H:1-113)
1i: CATH_2arjQ00 (Q:4-122)
1j: CATH_2arjR00 (R:4-123)
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Norway rat (Rattus norvegicus)
(32)
1a
2arjA02
A:109-211
1b
2arjL02
L:109-211
1c
2arjA01
A:1-108
1d
2arjL01
L:1-108
1e
2arjB02
B:114-227
1f
2arjH02
H:114-227
1g
2arjB01
B:1-113
1h
2arjH01
H:1-113
1i
2arjQ00
Q:4-122
1j
2arjR00
R:4-123
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Pfam Domains
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Asym.Unit (177 KB)
Header - Asym.Unit
Biol.Unit 1 (87 KB)
Header - Biol.Unit 1
Biol.Unit 2 (87 KB)
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