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2AMF
Asym. Unit
Info
Asym.Unit (218 KB)
Biol.Unit 1 (415 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF 1-PYRROLINE-5-CARBOXYLATE REDUCTASE FROM HUMAN PATHOGEN STREPTOCOCCUS PYOGENES
Authors
:
B. Nocek, L. Lezondra, D. Holzle, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)
Date
:
09 Aug 05 (Deposition) - 27 Sep 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (2x)
Keywords
:
1-Pyrroline-5-Reductase, Pyrroline-5-Carboxylate Reductase, Pyrroline Reductase, Proline Biosynthesis, Nad(P)Binding Protein, Rossmann Fold, Domain Swapping, Human Pathogen, Streptococcus Pyogenes, Structural Genomics, Mcsg, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Nocek, C. Chang, H. Li, L. Lezondra, D. Holzle, F. Collart, A. Joachimiak
Crystal Structures Of Delta(1)-Pyrroline-5-Carboxylate Reductase From Human Pathogens Neisseria Meningitides And Streptococcus Pyogenes
J. Mol. Biol. V. 354 91 2005
[
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Hetero Components
(2, 15)
Info
All Hetero Components
1a: SODIUM ION (NAa)
1b: SODIUM ION (NAb)
1c: SODIUM ION (NAc)
1d: SODIUM ION (NAd)
1e: SODIUM ION (NAe)
2a: PROLINE (PROa)
2b: PROLINE (PROb)
2c: PROLINE (PROc)
2d: PROLINE (PROd)
2e: PROLINE (PROe)
2f: PROLINE (PROf)
2g: PROLINE (PROg)
2h: PROLINE (PROh)
2i: PROLINE (PROi)
2j: PROLINE (PROj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NA
5
Ligand/Ion
SODIUM ION
2
PRO
10
Mod. Amino Acid
PROLINE
[
close Hetero Component info
]
Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:89 , ALA A:253 , LYS A:254 , LEU A:256 , HOH A:4334 , HOH A:4412
BINDING SITE FOR RESIDUE NA A 850
02
AC2
SOFTWARE
GLY B:89 , ALA B:253 , LYS B:254 , LEU B:256 , HOH B:4335 , HOH B:4394
BINDING SITE FOR RESIDUE NA B 851
03
AC3
SOFTWARE
GLY C:89 , ALA C:253 , LYS C:254 , LEU C:256 , HOH C:4332 , HOH C:4411
BINDING SITE FOR RESIDUE NA C 852
04
AC4
SOFTWARE
GLY D:89 , ARG D:94 , ALA D:253 , LYS D:254 , LEU D:256 , HOH D:4485 , HOH D:4486
BINDING SITE FOR RESIDUE NA D 853
05
AC5
SOFTWARE
GLY E:89 , ARG E:94 , ALA E:253 , LYS E:254 , LEU E:256 , HOH E:4412 , HOH E:4419
BINDING SITE FOR RESIDUE NA E 854
06
AC6
SOFTWARE
MET A:11 , MET A:86 , MET A:109 , PRO A:110 , MET A:112 , HOH A:4353 , PRO D:4330 , HOH D:4465
BINDING SITE FOR RESIDUE PRO D 4240
07
AC7
SOFTWARE
GLY A:163 , SER A:164 , ILE D:219 , SER D:221 , GLY D:224 , THR D:225 , THR D:226 , PRO D:4240 , HOH D:4389 , HOH D:4401
BINDING SITE FOR RESIDUE PRO D 4330
08
AC8
SOFTWARE
MET B:11 , MET B:109 , PRO B:110 , SER C:221 , PRO C:4331 , HOH C:4384
BINDING SITE FOR RESIDUE PRO C 4241
09
AC9
SOFTWARE
GLY B:163 , ILE C:219 , SER C:221 , GLY C:224 , THR C:225 , THR C:226 , PRO C:4241 , HOH C:4371 , HOH C:4414
BINDING SITE FOR RESIDUE PRO C 4331
10
BC1
SOFTWARE
ILE B:219 , SER B:221 , PRO B:4332 , HOH B:4409 , MET C:11 , MET C:86 , MET C:109 , PRO C:110 , MET C:112
BINDING SITE FOR RESIDUE PRO B 4242
11
BC2
SOFTWARE
ILE B:219 , SER B:221 , GLY B:224 , THR B:225 , THR B:226 , PRO B:4242 , HOH B:4393 , HOH B:4396 , GLY C:163
BINDING SITE FOR RESIDUE PRO B 4332
12
BC3
SOFTWARE
SER A:221 , PRO A:4333 , HOH A:4377 , MET D:11 , MET D:86 , MET D:109 , PRO D:110
BINDING SITE FOR RESIDUE PRO A 4243
13
BC4
SOFTWARE
ILE A:219 , SER A:221 , GLY A:224 , THR A:225 , THR A:226 , PRO A:4243 , HOH A:4352 , HOH A:4401 , GLY D:163 , SER D:164
BINDING SITE FOR RESIDUE PRO A 4333
14
BC5
SOFTWARE
MET E:11 , MET E:109 , PRO E:110 , MET E:112 , ILE E:219 , SER E:221 , PRO E:4334 , HOH E:4339 , HOH E:4406 , HOH E:4426
BINDING SITE FOR RESIDUE PRO E 4244
15
BC6
SOFTWARE
GLY E:163 , ILE E:219 , SER E:221 , GLY E:224 , THR E:225 , THR E:226 , PRO E:4244 , HOH E:4380 , HOH E:4415
BINDING SITE FOR RESIDUE PRO E 4334
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 10)
Info
All SCOP Domains
1a: SCOP_d2amfa1 (A:153-256)
1b: SCOP_d2amfb1 (B:153-256)
1c: SCOP_d2amfc1 (C:153-256)
1d: SCOP_d2amfd1 (D:153-256)
1e: SCOP_d2amfe1 (E:153-256)
2a: SCOP_d2amfa2 (A:0-152)
2b: SCOP_d2amfb2 (B:0-152)
2c: SCOP_d2amfc2 (C:1-152)
2d: SCOP_d2amfd2 (D:-1-152)
2e: SCOP_d2amfe2 (E:-2-152)
View:
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Classes
(
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(
)
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
6-phosphogluconate dehydrogenase C-terminal domain-like
(119)
Superfamily
:
6-phosphogluconate dehydrogenase C-terminal domain-like
(119)
Family
:
ProC C-terminal domain-like
(5)
Protein domain
:
Pyrroline-5-carboxylate reductase ProC
(4)
Streptococcus pyogenes [TaxId: 1314]
(2)
1a
d2amfa1
A:153-256
1b
d2amfb1
B:153-256
1c
d2amfc1
C:153-256
1d
d2amfd1
D:153-256
1e
d2amfe1
E:153-256
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
6-phosphogluconate dehydrogenase-like, N-terminal domain
(69)
Protein domain
:
Pyrroline-5-carboxylate reductase ProC
(4)
Streptococcus pyogenes [TaxId: 1314]
(2)
2a
d2amfa2
A:0-152
2b
d2amfb2
B:0-152
2c
d2amfc2
C:1-152
2d
d2amfd2
D:-1-152
2e
d2amfe2
E:-2-152
[
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CATH Domains
(2, 10)
Info
all CATH domains
1a: CATH_2amfA01 (A:2-150)
1b: CATH_2amfB01 (B:2-150)
1c: CATH_2amfC01 (C:2-150)
1d: CATH_2amfD01 (D:2-150)
1e: CATH_2amfE01 (E:2-150)
2a: CATH_2amfA02 (A:151-256)
2b: CATH_2amfB02 (B:151-256)
2c: CATH_2amfC02 (C:151-256)
2d: CATH_2amfD02 (D:151-256)
2e: CATH_2amfE02 (E:151-256)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Streptococcus pyogenes m1 gas. Organism_taxid: 160490. Strain: m1 gas.
(2)
1a
2amfA01
A:2-150
1b
2amfB01
B:2-150
1c
2amfC01
C:2-150
1d
2amfD01
D:2-150
1e
2amfE01
E:2-150
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
ProC C-terminal domain-like fold
(3)
Homologous Superfamily
:
ProC C-terminal domain-like
(3)
Streptococcus pyogenes m1 gas. Organism_taxid: 160490. Strain: m1 gas.
(2)
2a
2amfA02
A:151-256
2b
2amfB02
B:151-256
2c
2amfC02
C:151-256
2d
2amfD02
D:151-256
2e
2amfE02
E:151-256
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Pfam Domains
(0, 0)
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all PFAM domains
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Sorry, no Info available
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Chain D
Chain E
Asymmetric Unit 1
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