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2AHR
Biol. Unit 2
Info
Asym.Unit (225 KB)
Biol.Unit 1 (421 KB)
Biol.Unit 2 (89 KB)
Biol.Unit 3 (88 KB)
Biol.Unit 4 (90 KB)
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(1)
Title
:
CRYSTAL STRUCTURES OF 1-PYRROLINE-5-CARBOXYLATE REDUCTASE FROM HUMAN PATHOGEN STREPTOCOCCUS PYOGENES
Authors
:
B. Nocek, L. Lezondra, D. Holzle, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)
Date
:
28 Jul 05 (Deposition) - 13 Sep 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (2x)
Biol. Unit 2: A,D (1x)
Biol. Unit 3: B,C (1x)
Biol. Unit 4: E (2x)
Keywords
:
1-Pyrroline-5-Carboxylate Reductase, Pyrroline-5-Carboxylate Reductase, Pyrroline Reductase, Proline Biosynthesis, Nad(P)Binding Protein, Rossmann Fold, Doain Swapping, Human Pathogen, Streptococcus Pyogenes, Structural Genomics, Mcsg, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Nocek, C. Chang, H. Li, L. Lezondra, D. Holzle, F. Collart, A. Joachimiak
Crystal Structures Of Delta(1)-Pyrroline-5-Carboxylate Reductase From Human Pathogens Neisseria Meningitides And Streptococcus Pyogenes
J. Mol. Biol. V. 354 91 2005
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: FORMIC ACID (FMTa)
1b: FORMIC ACID (FMTb)
1c: FORMIC ACID (FMTc)
1d: FORMIC ACID (FMTd)
1e: FORMIC ACID (FMTe)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2ae: SELENOMETHIONINE (MSEae)
2af: SELENOMETHIONINE (MSEaf)
2ag: SELENOMETHIONINE (MSEag)
2ah: SELENOMETHIONINE (MSEah)
2ai: SELENOMETHIONINE (MSEai)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
4a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
4b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
4c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
4d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
4e: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPe)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
3e: SODIUM ION (NAe)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FMT
2
Ligand/Ion
FORMIC ACID
2
MSE
14
Mod. Amino Acid
SELENOMETHIONINE
3
NA
-1
Ligand/Ion
SODIUM ION
4
NAP
2
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
[
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]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC6 (SOFTWARE)
4: AC9 (SOFTWARE)
5: BC2 (SOFTWARE)
6: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:89 , ARG A:94 , ALA A:253 , LYS A:254 , LEU A:256 , HOH A:1509 , HOH A:1579
BINDING SITE FOR RESIDUE NA A 1257
2
AC4
SOFTWARE
GLY D:89 , ARG D:94 , ALA D:253 , LYS D:254 , LEU D:256 , HOH D:1656 , HOH D:1657
BINDING SITE FOR RESIDUE NA D 1260
3
AC6
SOFTWARE
GLY A:7 , VAL A:8 , GLY A:9 , LYS A:10 , MSE A:11 , GLY A:30 , SER A:31 , ARG A:35 , HIS A:51 , GLY A:64 , ILE A:65 , LYS A:66 , PRO A:67 , LEU A:69 , VAL A:73 , MSE A:86 , ALA A:87 , ALA A:88 , MSE A:109 , PRO A:110 , MSE A:112 , HOH A:1527 , HOH A:1529 , HOH A:1574 , HOH A:1578 , HOH A:1605 , HOH A:1635 , HOH A:1637 , HOH A:1646 , ALA D:218 , ILE D:219 , SER D:221 , HOH D:1637
BINDING SITE FOR RESIDUE NAP A 1500
4
AC9
SOFTWARE
ALA A:218 , ILE A:219 , SER A:221 , GLY D:7 , VAL D:8 , GLY D:9 , LYS D:10 , MSE D:11 , GLY D:30 , SER D:31 , ARG D:35 , HIS D:51 , GLY D:64 , ILE D:65 , LYS D:66 , PRO D:67 , LEU D:69 , VAL D:73 , MSE D:86 , ALA D:87 , ALA D:88 , MSE D:109 , PRO D:110 , MSE D:112 , HOH D:1517 , HOH D:1520 , HOH D:1521 , HOH D:1577 , HOH D:1594 , HOH D:1614 , HOH D:1617 , HOH D:1648 , HOH D:1660
BINDING SITE FOR RESIDUE NAP D 1503
5
BC2
SOFTWARE
ASP A:251 , LYS A:254
BINDING SITE FOR RESIDUE FMT A 1508
6
BC5
SOFTWARE
ILE D:250 , ASP D:251 , LYS D:254
BINDING SITE FOR RESIDUE FMT D 1511
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 10)
Info
All SCOP Domains
1a: SCOP_d2ahra1 (A:153-256)
1b: SCOP_d2ahrb1 (B:153-256)
1c: SCOP_d2ahrc1 (C:153-256)
1d: SCOP_d2ahrd1 (D:153-256)
1e: SCOP_d2ahre1 (E:153-256)
2a: SCOP_d2ahra2 (A:1-152)
2b: SCOP_d2ahrb2 (B:0-152)
2c: SCOP_d2ahrc2 (C:1-152)
2d: SCOP_d2ahrd2 (D:-1-152)
2e: SCOP_d2ahre2 (E:-2-152)
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Classes
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(
)
Folds
(
)
(
)
Superfamilies
(
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(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
6-phosphogluconate dehydrogenase C-terminal domain-like
(119)
Superfamily
:
6-phosphogluconate dehydrogenase C-terminal domain-like
(119)
Family
:
ProC C-terminal domain-like
(5)
Protein domain
:
Pyrroline-5-carboxylate reductase ProC
(4)
Streptococcus pyogenes [TaxId: 1314]
(2)
1a
d2ahra1
A:153-256
1b
d2ahrb1
B:153-256
1c
d2ahrc1
C:153-256
1d
d2ahrd1
D:153-256
1e
d2ahre1
E:153-256
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
6-phosphogluconate dehydrogenase-like, N-terminal domain
(69)
Protein domain
:
Pyrroline-5-carboxylate reductase ProC
(4)
Streptococcus pyogenes [TaxId: 1314]
(2)
2a
d2ahra2
A:1-152
2b
d2ahrb2
B:0-152
2c
d2ahrc2
C:1-152
2d
d2ahrd2
D:-1-152
2e
d2ahre2
E:-2-152
[
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CATH Domains
(2, 10)
Info
all CATH domains
1a: CATH_2ahrA01 (A:2-150)
1b: CATH_2ahrB01 (B:2-150)
1c: CATH_2ahrC01 (C:2-150)
1d: CATH_2ahrD01 (D:2-150)
1e: CATH_2ahrE01 (E:2-150)
2a: CATH_2ahrA02 (A:151-256)
2b: CATH_2ahrB02 (B:151-256)
2c: CATH_2ahrC02 (C:151-256)
2d: CATH_2ahrD02 (D:151-256)
2e: CATH_2ahrE02 (E:151-256)
View:
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Streptococcus pyogenes m1 gas. Organism_taxid: 160490. Strain: m1 gas.
(2)
1a
2ahrA01
A:2-150
1b
2ahrB01
B:2-150
1c
2ahrC01
C:2-150
1d
2ahrD01
D:2-150
1e
2ahrE01
E:2-150
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
ProC C-terminal domain-like fold
(3)
Homologous Superfamily
:
ProC C-terminal domain-like
(3)
Streptococcus pyogenes m1 gas. Organism_taxid: 160490. Strain: m1 gas.
(2)
2a
2ahrA02
A:151-256
2b
2ahrB02
B:151-256
2c
2ahrC02
C:151-256
2d
2ahrD02
D:151-256
2e
2ahrE02
E:151-256
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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