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2AE8
Asym. Unit
Info
Asym.Unit (198 KB)
Biol.Unit 1 (737 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE FROM STAPHYLOCOCCUS AUREUS SUBSP. AUREUS N315
Authors
:
Y. Kim, P. Quartey, D. Holzle, F. Collart, A. Joachimiak, Midwest Cent Structural Genomics (Mcsg)
Date
:
21 Jul 05 (Deposition) - 06 Sep 05 (Release) - 20 May 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.01
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (4x)
Keywords
:
Beta-Alpha-Beta Sandwich, Duplication Of A Half-Domain, Imidazoleglycerol-Phosphate Dehydratase (Igpd), Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Lyase
(Keyword Search:
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Reference
:
Y. Kim, P. Quartey, D. Holzle, F. Collart, A. Joachimiak
Crystal Structure Of Imidazoleglycerol-Phosphate Dehydratas From Staphylococcus Aureus Subsp. Aureus N315
To Be Published
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Hetero Components
(2, 46)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
1e: MAGNESIUM ION (MGe)
1f: MAGNESIUM ION (MGf)
1g: MAGNESIUM ION (MGg)
1h: MAGNESIUM ION (MGh)
1i: MAGNESIUM ION (MGi)
1j: MAGNESIUM ION (MGj)
1k: MAGNESIUM ION (MGk)
1l: MAGNESIUM ION (MGl)
1m: MAGNESIUM ION (MGm)
1n: MAGNESIUM ION (MGn)
1o: MAGNESIUM ION (MGo)
1p: MAGNESIUM ION (MGp)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
16
Ligand/Ion
MAGNESIUM ION
2
MSE
30
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:36 , HIS A:63 , HIS A:158 , GLU A:162 , MG A:1003
BINDING SITE FOR RESIDUE MG A 1001
02
AC2
SOFTWARE
HIS A:62 , GLU A:66 , HIS A:159 , HOH A:1046 , HOH A:1156 , HOH A:1163
BINDING SITE FOR RESIDUE MG A 1002
03
AC3
SOFTWARE
MSE A:96 , GLU A:162 , MG A:1001 , HOH A:1157 , HOH A:1163
BINDING SITE FOR RESIDUE MG A 1003
04
AC4
SOFTWARE
HIS B:62 , GLU B:66 , HOH B:1018 , HOH B:1154 , HOH B:1160 , HIS C:159
BINDING SITE FOR RESIDUE MG B 1004
05
AC5
SOFTWARE
HIS B:159 , HIS F:62 , GLU F:66 , HOH F:1092 , HOH F:1153 , HOH F:1158
BINDING SITE FOR RESIDUE MG F 1005
06
AC6
SOFTWARE
ARG A:137 , ILE A:141 , HOH A:1081 , PRO B:111 , ILE B:141 , HOH B:1008
BINDING SITE FOR RESIDUE MG B 1006
07
AC7
SOFTWARE
HIS B:36 , HIS B:158 , GLU B:162 , HOH B:1159 , HIS F:63
BINDING SITE FOR RESIDUE MG B 1007
08
AC8
SOFTWARE
HIS B:63 , HIS C:36 , HIS C:158 , GLU C:162
BINDING SITE FOR RESIDUE MG C 1008
09
AC9
SOFTWARE
HIS C:62 , GLU C:66 , HOH C:1036 , HOH C:1155 , HOH C:1164 , HIS D:159
BINDING SITE FOR RESIDUE MG C 1009
10
BC1
SOFTWARE
HIS C:63 , HIS D:36 , HIS D:158 , GLU D:162 , HOH D:1148
BINDING SITE FOR RESIDUE MG D 1010
11
BC2
SOFTWARE
HIS B:62 , GLU B:130 , LEU B:131 , HOH B:1044 , ASN C:156 , HIS C:158
BINDING SITE FOR RESIDUE MG C 1011
12
BC3
SOFTWARE
HIS D:62 , GLU D:66 , HOH D:1142 , HIS F:159 , HOH F:1055 , HOH F:1073
BINDING SITE FOR RESIDUE MG F 1012
13
BC4
SOFTWARE
HIS E:36 , HIS E:63 , HIS E:158 , GLU E:162 , HOH E:1203
BINDING SITE FOR RESIDUE MG E 1013
14
BC5
SOFTWARE
HIS E:62 , GLU E:66 , HIS E:159 , HOH E:1200 , HOH E:1201 , HOH E:1202
BINDING SITE FOR RESIDUE MG E 1014
15
BC6
SOFTWARE
GLU E:98 , GLU E:134 , ARG E:137 , HOH E:1095
BINDING SITE FOR RESIDUE MG E 1015
16
BC7
SOFTWARE
HIS D:63 , HIS F:36 , HIS F:158 , GLU F:162
BINDING SITE FOR RESIDUE MG F 1016
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: IGP_DEHYDRATASE_1 (A:60-72,B:60-72,C:60-72,D:60-72,E:...)
2: IGP_DEHYDRATASE_2 (A:154-166,B:154-166,C:154-166,D:15...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IGP_DEHYDRATASE_1
PS00954
Imidazoleglycerol-phosphate dehydratase signature 1.
HIS7_STAAN
59-72
6
A:60-72
B:60-72
C:60-72
D:60-72
E:60-72
F:61-72
2
IGP_DEHYDRATASE_2
PS00955
Imidazoleglycerol-phosphate dehydratase signature 2.
HIS7_STAAN
154-166
6
A:154-166
B:154-166
C:154-166
D:154-166
E:154-166
F:154-166
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d2ae8a1 (A:1-84)
1b: SCOP_d2ae8a2 (A:85-179)
1c: SCOP_d2ae8f1 (F:1-84)
1d: SCOP_d2ae8f2 (F:85-179)
1e: SCOP_d2ae8b1 (B:0-84)
1f: SCOP_d2ae8b2 (B:85-179)
1g: SCOP_d2ae8c1 (C:1-84)
1h: SCOP_d2ae8c2 (C:85-179)
1i: SCOP_d2ae8d1 (D:1-84)
1j: SCOP_d2ae8d2 (D:85-179)
1k: SCOP_d2ae8e1 (E:0-84)
1l: SCOP_d2ae8e2 (E:85-179)
View:
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Classes
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)
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Folds
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Superfamilies
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Families
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ribosomal protein S5 domain 2-like
(306)
Superfamily
:
Ribosomal protein S5 domain 2-like
(306)
Family
:
Imidazole glycerol phosphate dehydratase
(4)
Protein domain
:
Imidazole glycerol phosphate dehydratase
(3)
Staphylococcus aureus [TaxId: 1280]
(1)
1a
d2ae8a1
A:1-84
1b
d2ae8a2
A:85-179
1c
d2ae8f1
F:1-84
1d
d2ae8f2
F:85-179
1e
d2ae8b1
B:0-84
1f
d2ae8b2
B:85-179
1g
d2ae8c1
C:1-84
1h
d2ae8c2
C:85-179
1i
d2ae8d1
D:1-84
1j
d2ae8d2
D:85-179
1k
d2ae8e1
E:0-84
1l
d2ae8e2
E:85-179
[
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CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_2ae8A02 (A:88-179)
1b: CATH_2ae8B02 (B:88-179)
1c: CATH_2ae8E01 (E:0-87)
1d: CATH_2ae8F01 (F:2-87)
1e: CATH_2ae8C02 (C:88-179)
1f: CATH_2ae8D02 (D:88-179)
1g: CATH_2ae8E02 (E:88-179)
1h: CATH_2ae8F02 (F:88-179)
1i: CATH_2ae8B01 (B:0-87)
1j: CATH_2ae8A01 (A:2-87)
1k: CATH_2ae8C01 (C:2-87)
1l: CATH_2ae8D01 (D:2-87)
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Topologies
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Homologous Superfamilies
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Ribosomal Protein S5; domain 2
(189)
Homologous Superfamily
:
Imidazole glycerol phosphate dehydratase; domain 1
(3)
Aureus n315 (Staphylococcus aureus subsp)
(1)
1a
2ae8A02
A:88-179
1b
2ae8B02
B:88-179
1c
2ae8E01
E:0-87
1d
2ae8F01
F:2-87
1e
2ae8C02
C:88-179
1f
2ae8D02
D:88-179
1g
2ae8E02
E:88-179
1h
2ae8F02
F:88-179
1i
2ae8B01
B:0-87
1j
2ae8A01
A:2-87
1k
2ae8C01
C:2-87
1l
2ae8D01
D:2-87
[
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Pfam Domains
(0, 0)
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all PFAM domains
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