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2AD8
Asym. Unit
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Asym.Unit (224 KB)
Biol.Unit 1 (218 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF METHANOL DEHYDROGENASE FROM M. W3A1 (FORM C) IN THE PRESENCE OF ETHANOL
Authors
:
J. Li, J. -H. Gan, Z. -X. Xia, F. S. Mathews
Date
:
20 Jul 05 (Deposition) - 25 Jul 06 (Release) - 18 Sep 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Methanol Dehydrogenase, Pqq Configuration, Ethanol, Oxidoreductase
(Keyword Search:
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)
Reference
:
J. Li, J. -H. Gan, F. S. Mathews, Z. -X. Xia
The Enzymatic Reaction-Induced Configuration Change Of The Prosthetic Group Pqq Of Methanol Dehydrogenase
Biochem. Biophys. Res. Commun. V. 406 621 2011
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: PYRROLOQUINOLINE QUINONE (PQQa)
2b: PYRROLOQUINOLINE QUINONE (PQQb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
PQQ
2
Ligand/Ion
PYRROLOQUINOLINE QUINONE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:171 , ASN A:255 , ASP A:297 , PQQ A:701
BINDING SITE FOR RESIDUE CA A 702
2
AC2
SOFTWARE
GLU C:171 , ASN C:255 , ASP C:297 , PQQ C:703
BINDING SITE FOR RESIDUE CA C 704
3
AC3
SOFTWARE
GLU A:55 , CYS A:103 , CYS A:104 , VAL A:107 , ARG A:109 , THR A:153 , SER A:168 , GLY A:169 , ALA A:170 , GLU A:171 , THR A:235 , TRP A:237 , ASN A:255 , ARG A:324 , ASN A:387 , TRP A:467 , GLY A:530 , TRP A:531 , CA A:702 , HOH A:1100 , HOH A:1131 , HOH A:2001
BINDING SITE FOR RESIDUE PQQ A 701
4
AC4
SOFTWARE
GLU C:55 , CYS C:103 , CYS C:104 , VAL C:107 , ARG C:109 , THR C:153 , SER C:168 , GLY C:169 , ALA C:170 , GLU C:171 , THR C:235 , TRP C:237 , ASN C:255 , ARG C:324 , ASN C:387 , TRP C:467 , GLY C:530 , TRP C:531 , CA C:704 , HOH C:1013 , HOH C:1041 , HOH C:2002
BINDING SITE FOR RESIDUE PQQ C 703
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: BACTERIAL_PQQ_2 (A:237-258,C:237-258)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BACTERIAL_PQQ_2
PS00364
Bacterial quinoprotein dehydrogenases signature 2.
DHM1_METME
239-260
2
A:237-258
C:237-258
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2ad8b_ (B:)
1b: SCOP_d2ad8d_ (D:)
2a: SCOP_d2ad8a_ (A:)
2b: SCOP_d2ad8c_ (C:)
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Protein Domains
(
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(
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Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Non-globular all-alpha subunits of globular proteins
(135)
Superfamily
:
Methanol dehydrogenase subunit
(10)
Family
:
Methanol dehydrogenase subunit
(10)
Protein domain
:
Methanol dehydrogenase, light chain
(9)
Methylophilus methylotrophus, w3a1 [TaxId: 17]
(5)
1a
d2ad8b_
B:
1b
d2ad8d_
D:
Class
:
All beta proteins
(24004)
Fold
:
8-bladed beta-propeller
(135)
Superfamily
:
Quinoprotein alcohol dehydrogenase-like
(14)
Family
:
Quinoprotein alcohol dehydrogenase-like
(13)
Protein domain
:
Methanol dehydrogenase, heavy chain
(9)
Methylophilus methylotrophus, w3a1 [TaxId: 17]
(5)
2a
d2ad8a_
A:
2b
d2ad8c_
C:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2ad8B00 (B:1-69)
1b: CATH_2ad8D00 (D:1-69)
2a: CATH_2ad8A00 (A:1-571)
2b: CATH_2ad8C00 (C:1-571)
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Organisms
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Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Methanol Dehydrogenase; Chain B
(10)
Homologous Superfamily
:
Methanol Dehydrogenase, chain B
(10)
Methylophilus methylotrophus w3a1. Organism_taxid: 2327. Strain: w3a1.
(5)
1a
2ad8B00
B:1-69
1b
2ad8D00
D:1-69
Class
:
Mainly Beta
(13760)
Architecture
:
8 Propellor
(110)
Topology
:
Methanol Dehydrogenase; Chain A
(110)
Homologous Superfamily
:
[code=2.140.10.10, no name defined]
(14)
Methylophilus methylotrophus w3a1. Organism_taxid: 2327. Strain: w3a1.
(5)
2a
2ad8A00
A:1-571
2b
2ad8C00
C:1-571
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Pfam Domains
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Asymmetric Unit 1
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