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2A40
Asym. Unit
Info
Asym.Unit (241 KB)
Biol.Unit 1 (119 KB)
Biol.Unit 2 (118 KB)
Biol.Unit 3 (230 KB)
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(1)
Title
:
TERNARY COMPLEX OF THE WH2 DOMAIN OF WAVE WITH ACTIN-DNASE I
Authors
:
D. Chereau, F. Kerff, R. Dominguez
Date
:
27 Jun 05 (Deposition) - 01 Nov 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: A,B,C,D,E,F (1x)
Keywords
:
Wave, Wh2, Wasp, Actin, Dnase I, Arp2/3, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Chereau, F. Kerff, P. Graceffa, Z. Grabarek, K. Langsetmo, R. Dominguez
Actin-Bound Structures Of Wiskott-Aldrich Syndrome Protein (Wasp)-Homology Domain 2 And The Implications For Filament Assembly
Proc. Natl. Acad. Sci. Usa V. 102 16644 2005
[
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Hetero Components
(6, 16)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
1b: ADENOSINE-5'-TRIPHOSPHATE (ATPb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: 4-METHYL-HISTIDINE (HICa)
4b: 4-METHYL-HISTIDINE (HICb)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
2
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
CA
4
Ligand/Ion
CALCIUM ION
3
GOL
2
Ligand/Ion
GLYCEROL
4
HIC
2
Mod. Amino Acid
4-METHYL-HISTIDINE
5
MG
2
Ligand/Ion
MAGNESIUM ION
6
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN B:18 , ALA B:248 , NAG B:271 , HOH B:1446
BINDING SITE FOR RESIDUE NAG B 270
02
AC2
SOFTWARE
MET B:245 , NAG B:270 , HOH B:1504
BINDING SITE FOR RESIDUE NAG B 271
03
AC3
SOFTWARE
ASN E:18 , LEU E:21 , ALA E:248 , NAG E:271 , HOH E:1457
BINDING SITE FOR RESIDUE NAG E 270
04
AC4
SOFTWARE
MET E:245 , NAG E:270 , HOH E:1411
BINDING SITE FOR RESIDUE NAG E 271
05
AC5
SOFTWARE
ATP A:1379 , HOH A:1384 , HOH A:1385 , HOH A:1387 , HOH A:1391 , HOH A:1395
BINDING SITE FOR RESIDUE CA A 1381
06
AC6
SOFTWARE
ASP B:201 , THR B:203 , THR B:205 , THR B:207 , HOH B:1388 , HOH B:1491
BINDING SITE FOR RESIDUE CA B 1273
07
AC7
SOFTWARE
ATP D:1380 , HOH D:1383 , HOH D:1385 , HOH D:1387 , HOH D:1389 , HOH D:1394
BINDING SITE FOR RESIDUE CA D 1382
08
AC8
SOFTWARE
ASP E:201 , THR E:203 , THR E:205 , THR E:207 , HOH E:1276 , HOH E:1278
BINDING SITE FOR RESIDUE CA E 1272
09
AC9
SOFTWARE
ASP B:172 , ASP B:198 , HOH B:1409 , HOH B:1490 , HOH B:1492 , HOH B:1493
BINDING SITE FOR RESIDUE MG B 1274
10
BC1
SOFTWARE
ASP E:172 , ASP E:198 , HOH E:1280 , HOH E:1371 , HOH E:1372 , HOH E:1373
BINDING SITE FOR RESIDUE MG E 1275
11
BC2
SOFTWARE
GLY A:13 , SER A:14 , GLY A:15 , LEU A:16 , LYS A:18 , GLY A:156 , ASP A:157 , GLY A:158 , VAL A:159 , GLY A:182 , ARG A:210 , LYS A:213 , GLU A:214 , GLY A:301 , GLY A:302 , THR A:303 , MET A:305 , TYR A:306 , LYS A:336 , CA A:1381 , HOH A:1386 , HOH A:1387 , HOH A:1391 , HOH A:1395 , HOH A:1402 , HOH A:1412 , HOH A:1515 , HOH A:1581
BINDING SITE FOR RESIDUE ATP A 1379
12
BC3
SOFTWARE
GLY D:13 , SER D:14 , GLY D:15 , LEU D:16 , LYS D:18 , GLY D:156 , ASP D:157 , GLY D:158 , VAL D:159 , GLY D:182 , LYS D:213 , GLU D:214 , GLY D:301 , GLY D:302 , THR D:303 , MET D:305 , TYR D:306 , LYS D:336 , CA D:1382 , HOH D:1384 , HOH D:1387 , HOH D:1394 , HOH D:1400 , HOH D:1403 , HOH D:1411 , HOH D:1520 , HOH D:1599
BINDING SITE FOR RESIDUE ATP D 1380
13
BC4
SOFTWARE
MET A:47 , HOH A:1663 , ASP B:93 , THR B:94 , GLU E:127
BINDING SITE FOR RESIDUE GOL A 1383
14
BC5
SOFTWARE
THR A:202 , THR A:203 , ALA A:204 , GLY B:12 , GLU B:13 , ARG B:41 , ASP B:42 , SER B:43 , HOH B:1445
BINDING SITE FOR RESIDUE GOL B 1384
[
close Site info
]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_DNAS1_BOVIN_001 (H121P, chain B/E, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_DNAS1_BOVIN_001
*
H
143
P
DNAS1_BOVIN
---
---
B/E
H
121
P
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(6, 12)
Info
All PROSITE Patterns/Profiles
1: ACTINS_1 (A:53-63,D:53-63)
2: ACTINS_ACT_LIKE (A:104-116,D:104-116)
3: DNASE_I_1 (B:130-150,E:130-150)
4: DNASE_I_2 (B:167-174,E:167-174)
5: ACTINS_2 (A:356-364,D:356-364)
6: WH2 (C:435-452,F:435-452)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ACTINS_1
PS00406
Actins signature 1.
ACTS_RABIT
55-65
2
A:53-63
D:53-63
2
ACTINS_ACT_LIKE
PS01132
Actins and actin-related proteins signature.
ACTS_RABIT
106-118
2
A:104-116
D:104-116
3
DNASE_I_1
PS00919
Deoxyribonuclease I signature 1.
DNAS1_BOVIN
152-172
2
B:130-150
E:130-150
4
DNASE_I_2
PS00918
Deoxyribonuclease I signature 2.
DNAS1_BOVIN
189-196
2
B:167-174
E:167-174
5
ACTINS_2
PS00432
Actins signature 2.
ACTS_RABIT
358-366
2
A:356-364
D:356-364
6
WH2
PS51082
WH2 domain profile.
WASF2_HUMAN
436-453
2
C:435-452
F:435-452
[
close PROSITE info
]
Exons
(8, 16)
Info
All Exons
Exon 1.2 (B:1-27 | E:1-27)
Exon 1.3 (B:28-57 | E:28-57)
Exon 1.4 (B:57-85 | E:57-85)
Exon 1.5 (B:85-124 | E:85-124)
Exon 1.6 (B:124-161 | E:124-161)
Exon 1.7 (B:162-213 | E:162-213)
Exon 1.8 (B:213-245 | E:213-245)
Exon 1.9 (B:246-260 | E:246-260)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/1.8
8: Boundary 1.8/1.9
9: Boundary 1.9/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000026784
1
ENSBTAE00000293181
chr25:
3564711-3564829
119
DNAS1_BOVIN
-
0
0
-
-
1.2
ENSBTAT00000026784
2
ENSBTAE00000218065
chr25:
3565156-3565303
148
DNAS1_BOVIN
1-49
49
2
B:1-27
E:1-27
27
27
1.3
ENSBTAT00000026784
3
ENSBTAE00000420413
chr25:
3565639-3565727
89
DNAS1_BOVIN
50-79
30
2
B:28-57
E:28-57
30
30
1.4
ENSBTAT00000026784
4
ENSBTAE00000410212
chr25:
3565904-3565987
84
DNAS1_BOVIN
79-107
29
2
B:57-85
E:57-85
29
29
1.5
ENSBTAT00000026784
5
ENSBTAE00000218074
chr25:
3566232-3566347
116
DNAS1_BOVIN
107-146
40
2
B:85-124
E:85-124
40
40
1.6
ENSBTAT00000026784
6
ENSBTAE00000407443
chr25:
3566499-3566611
113
DNAS1_BOVIN
146-183
38
2
B:124-161
E:124-161
38
38
1.7
ENSBTAT00000026784
7
ENSBTAE00000398022
chr25:
3566701-3566855
155
DNAS1_BOVIN
184-235
52
2
B:162-213
E:162-213
52
52
1.8
ENSBTAT00000026784
8
ENSBTAE00000425804
chr25:
3567129-3567225
97
DNAS1_BOVIN
235-267
33
2
B:213-245
E:213-245
33
33
1.9
ENSBTAT00000026784
9
ENSBTAE00000293180
chr25:
3567369-3567733
365
DNAS1_BOVIN
268-282
15
2
B:246-260
E:246-260
15
15
[
close EXON info
]
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d2a40b_ (B:)
1b: SCOP_d2a40e_ (E:)
2a: SCOP_d2a40a1 (A:7-146)
2b: SCOP_d2a40a2 (A:147-366)
2c: SCOP_d2a40d1 (D:7-146)
2d: SCOP_d2a40d2 (D:147-366)
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)
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(
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DNase I-like
(70)
Superfamily
:
DNase I-like
(70)
Family
:
DNase I-like
(31)
Protein domain
:
Deoxyribonuclease I
(11)
Cow (Bos taurus) [TaxId: 9913]
(11)
1a
d2a40b_
B:
1b
d2a40e_
E:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
Actin/HSP70
(199)
Protein domain
:
Actin
(69)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(55)
2a
d2a40a1
A:7-146
2b
d2a40a2
A:147-366
2c
d2a40d1
D:7-146
2d
d2a40d2
D:147-366
[
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]
CATH Domains
(4, 10)
Info
all CATH domains
1a: CATH_2a40A01 (A:6-33,A:71-134,A:337-366)
1b: CATH_2a40D01 (D:6-33,D:71-134,D:337-366)
1c: CATH_2a40A03 (A:136-181,A:271-332)
1d: CATH_2a40D03 (D:136-181,D:271-332)
2a: CATH_2a40B00 (B:1-260)
2b: CATH_2a40E00 (E:1-260)
3a: CATH_2a40A04 (A:182-267)
3b: CATH_2a40D04 (D:182-267)
4a: CATH_2a40A02 (A:34-68)
4b: CATH_2a40D02 (D:34-68)
View:
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Topologies
(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.40, no name defined]
(217)
Rabbit (Oryctolagus cuniculus)
(44)
1a
2a40A01
A:6-33,A:71-134,A:337-366
1b
2a40D01
D:6-33,D:71-134,D:337-366
1c
2a40A03
A:136-181,A:271-332
1d
2a40D03
D:136-181,D:271-332
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Deoxyribonuclease I; Chain A
(35)
Homologous Superfamily
:
[code=3.60.10.10, no name defined]
(35)
Rabbit (Oryctolagus cuniculus)
(7)
2a
2a40B00
B:1-260
2b
2a40E00
E:1-260
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Actin; Chain A, domain 4
(156)
Homologous Superfamily
:
Actin; Chain A, domain 4
(155)
Rabbit (Oryctolagus cuniculus)
(44)
3a
2a40A04
A:182-267
3b
2a40D04
D:182-267
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Actin; Chain A, domain 2
(36)
Homologous Superfamily
:
Actin; Chain A, domain 2
(36)
Rabbit (Oryctolagus cuniculus)
(17)
4a
2a40A02
A:34-68
4b
2a40D02
D:34-68
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
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Asym.Unit (241 KB)
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