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2A3Z
Asym. Unit
Info
Asym.Unit (123 KB)
Biol.Unit 1 (115 KB)
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(1)
Title
:
TERNARY COMPLEX OF THE WH2 DOMAIN OF WASP WITH ACTIN-DNASE I
Authors
:
D. Chereau, F. Kerff, R. Dominguez
Date
:
27 Jun 05 (Deposition) - 01 Nov 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.08
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Wasp, Wh2, Actin, Dnase I, Arp2/3, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Chereau, F. Kerff, P. Graceffa, Z. Grabarek, K. Langsetmo, R. Dominguez
Actin-Bound Structures Of Wiskott-Aldrich Syndrome Protein (Wasp)-Homology Domain 2 And The Implications For Filament Assembly
Proc. Natl. Acad. Sci. Usa V. 102 16644 2005
[
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Hetero Components
(7, 11)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: FORMIC ACID (FMTa)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
5a: 4-METHYL-HISTIDINE (HICa)
6a: MAGNESIUM ION (MGa)
7a: N-ACETYL-D-GLUCOSAMINE (NAGa)
7b: N-ACETYL-D-GLUCOSAMINE (NAGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
1
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
CA
2
Ligand/Ion
CALCIUM ION
3
FMT
1
Ligand/Ion
FORMIC ACID
4
GOL
3
Ligand/Ion
GLYCEROL
5
HIC
1
Mod. Amino Acid
4-METHYL-HISTIDINE
6
MG
1
Ligand/Ion
MAGNESIUM ION
7
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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]
Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN B:18 , ALA B:248 , NAG B:271 , HOH B:1482
BINDING SITE FOR RESIDUE NAG B 270
02
AC2
SOFTWARE
MET B:245 , NAG B:270
BINDING SITE FOR RESIDUE NAG B 271
03
AC3
SOFTWARE
ATP A:1380 , HOH A:1386 , HOH A:1391 , HOH A:1393 , HOH A:1394 , HOH A:1420
BINDING SITE FOR RESIDUE CA A 1381
04
AC4
SOFTWARE
ASP B:201 , THR B:203 , THR B:205 , THR B:207 , HOH B:1391 , HOH B:1397
BINDING SITE FOR RESIDUE CA B 1273
05
AC5
SOFTWARE
ASP B:172 , ASP B:198 , HOH B:1386 , HOH B:1408 , HOH B:1416 , HOH B:1501
BINDING SITE FOR RESIDUE MG B 1274
06
AC6
SOFTWARE
GLY A:13 , SER A:14 , GLY A:15 , LEU A:16 , LYS A:18 , GLY A:156 , ASP A:157 , GLY A:158 , VAL A:159 , GLY A:182 , LYS A:213 , GLU A:214 , GLY A:301 , GLY A:302 , THR A:303 , MET A:305 , TYR A:306 , LYS A:336 , CA A:1381 , HOH A:1387 , HOH A:1390 , HOH A:1393 , HOH A:1420 , HOH A:1422 , HOH A:1439 , HOH A:1514
BINDING SITE FOR RESIDUE ATP A 1380
07
AC7
SOFTWARE
TYR A:188 , MET A:227 , ARG A:256 , GOL A:1383 , HOH A:1441
BINDING SITE FOR RESIDUE GOL A 1382
08
AC8
SOFTWARE
LEU A:236 , LYS A:238 , ARG A:254 , GOL A:1382
BINDING SITE FOR RESIDUE GOL A 1383
09
AC9
SOFTWARE
VAL B:40 , ARG B:41 , ASP B:42 , PRO B:70 , ARG B:79
BINDING SITE FOR RESIDUE FMT B 1275
10
BC1
SOFTWARE
THR A:202 , THR A:203 , ALA A:204 , GLY B:12 , GLU B:13 , ARG B:41 , ASP B:42 , SER B:43
BINDING SITE FOR RESIDUE GOL B 1384
[
close Site info
]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_DNAS1_BOVIN_001 (H121P, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_DNAS1_BOVIN_001
*
H
143
P
DNAS1_BOVIN
---
---
B
H
121
P
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(5, 5)
Info
All PROSITE Patterns/Profiles
1: ACTINS_1 (A:53-63)
2: ACTINS_ACT_LIKE (A:104-116)
3: DNASE_I_1 (B:130-150)
4: DNASE_I_2 (B:167-174)
5: ACTINS_2 (A:356-364)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ACTINS_1
PS00406
Actins signature 1.
ACTS_RABIT
55-65
1
A:53-63
2
ACTINS_ACT_LIKE
PS01132
Actins and actin-related proteins signature.
ACTS_RABIT
106-118
1
A:104-116
3
DNASE_I_1
PS00919
Deoxyribonuclease I signature 1.
DNAS1_BOVIN
152-172
1
B:130-150
4
DNASE_I_2
PS00918
Deoxyribonuclease I signature 2.
DNAS1_BOVIN
189-196
1
B:167-174
5
ACTINS_2
PS00432
Actins signature 2.
ACTS_RABIT
358-366
1
A:356-364
[
close PROSITE info
]
Exons
(10, 10)
Info
All Exons
Exon 1.2 (B:1-27)
Exon 1.3 (B:28-57)
Exon 1.4 (B:57-85)
Exon 1.5 (B:85-124)
Exon 1.6 (B:124-161)
Exon 1.7 (B:162-213)
Exon 1.8 (B:213-245)
Exon 1.9 (B:246-260)
Exon 2.12b (C:431-446)
Exon 2.13a (C:447-447)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1/1.2
02: Boundary 1.2/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7
07: Boundary 1.7/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/-
10: Boundary 2.11b/2.12b
11: Boundary 2.12b/2.13a
12: Boundary 2.13a/2.14
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000026784
1
ENSBTAE00000293181
chr25:
3564711-3564829
119
DNAS1_BOVIN
-
0
0
-
-
1.2
ENSBTAT00000026784
2
ENSBTAE00000218065
chr25:
3565156-3565303
148
DNAS1_BOVIN
1-49
49
1
B:1-27
27
1.3
ENSBTAT00000026784
3
ENSBTAE00000420413
chr25:
3565639-3565727
89
DNAS1_BOVIN
50-79
30
1
B:28-57
30
1.4
ENSBTAT00000026784
4
ENSBTAE00000410212
chr25:
3565904-3565987
84
DNAS1_BOVIN
79-107
29
1
B:57-85
29
1.5
ENSBTAT00000026784
5
ENSBTAE00000218074
chr25:
3566232-3566347
116
DNAS1_BOVIN
107-146
40
1
B:85-124
40
1.6
ENSBTAT00000026784
6
ENSBTAE00000407443
chr25:
3566499-3566611
113
DNAS1_BOVIN
146-183
38
1
B:124-161
38
1.7
ENSBTAT00000026784
7
ENSBTAE00000398022
chr25:
3566701-3566855
155
DNAS1_BOVIN
184-235
52
1
B:162-213
52
1.8
ENSBTAT00000026784
8
ENSBTAE00000425804
chr25:
3567129-3567225
97
DNAS1_BOVIN
235-267
33
1
B:213-245
33
1.9
ENSBTAT00000026784
9
ENSBTAE00000293180
chr25:
3567369-3567733
365
DNAS1_BOVIN
268-282
15
1
B:246-260
15
2.3a
ENST00000376701
3a
ENSE00001707442
X:48542168-48542374
207
WASP_HUMAN
1-44
44
0
-
-
2.4
ENST00000376701
4
ENSE00000669941
X:48542672-48542812
141
WASP_HUMAN
45-91
47
0
-
-
2.5
ENST00000376701
5
ENSE00000332766
X:48543936-48544022
87
WASP_HUMAN
92-120
29
0
-
-
2.6a
ENST00000376701
6a
ENSE00000332767
X:48544123-48544225
103
WASP_HUMAN
121-155
35
0
-
-
2.7
ENST00000376701
7
ENSE00000669945
X:48544335-48544376
42
WASP_HUMAN
155-169
15
0
-
-
2.8
ENST00000376701
8
ENSE00000669947
X:48544470-48544523
54
WASP_HUMAN
169-187
19
0
-
-
2.9b
ENST00000376701
9b
ENSE00000332770
X:48545170-48545344
175
WASP_HUMAN
187-245
59
0
-
-
2.10a
ENST00000376701
10a
ENSE00000332771
X:48546443-48546485
43
WASP_HUMAN
245-259
15
0
-
-
2.11b
ENST00000376701
11b
ENSE00000669950
X:48546689-48546842
154
WASP_HUMAN
260-311
52
0
-
-
2.12b
ENST00000376701
12b
ENSE00001255082
X:48547049-48547455
407
WASP_HUMAN
311-446
136
1
C:431-446
16
2.13a
ENST00000376701
13a
ENSE00000867103
X:48547709-48547823
115
WASP_HUMAN
447-485
39
1
C:447-447
1
2.14
ENST00000376701
14
ENSE00000867104
X:48549498-48549818
321
WASP_HUMAN
485-502
18
0
-
-
[
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]
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d2a3zb_ (B:)
2a: SCOP_d2a3za1 (A:7-146)
2b: SCOP_d2a3za2 (A:147-365)
View:
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Classes
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)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DNase I-like
(70)
Superfamily
:
DNase I-like
(70)
Family
:
DNase I-like
(31)
Protein domain
:
Deoxyribonuclease I
(11)
Cow (Bos taurus) [TaxId: 9913]
(11)
1a
d2a3zb_
B:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
Actin/HSP70
(199)
Protein domain
:
Actin
(69)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(55)
2a
d2a3za1
A:7-146
2b
d2a3za2
A:147-365
[
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]
CATH Domains
(4, 5)
Info
all CATH domains
1a: CATH_2a3zA01 (A:6-34,A:71-134,A:337-365)
1b: CATH_2a3zA03 (A:136-181,A:271-332)
2a: CATH_2a3zB00 (B:1-260)
3a: CATH_2a3zA04 (A:182-267)
4a: CATH_2a3zA02 (A:35-68)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.40, no name defined]
(217)
Rabbit (Oryctolagus cuniculus)
(44)
1a
2a3zA01
A:6-34,A:71-134,A:337-365
1b
2a3zA03
A:136-181,A:271-332
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Deoxyribonuclease I; Chain A
(35)
Homologous Superfamily
:
[code=3.60.10.10, no name defined]
(35)
Rabbit (Oryctolagus cuniculus)
(7)
2a
2a3zB00
B:1-260
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Actin; Chain A, domain 4
(156)
Homologous Superfamily
:
Actin; Chain A, domain 4
(155)
Rabbit (Oryctolagus cuniculus)
(44)
3a
2a3zA04
A:182-267
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Actin; Chain A, domain 2
(36)
Homologous Superfamily
:
Actin; Chain A, domain 2
(36)
Rabbit (Oryctolagus cuniculus)
(17)
4a
2a3zA02
A:35-68
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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Atom Selection
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Protein & NOT PROSITE
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Chain C
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