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Getting 'Exon' information from database.
2A1U
Asym. Unit
Info
Asym.Unit (97 KB)
Biol.Unit 1 (92 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN ETF E165BETAA MUTANT
Authors
:
H. S. Toogood, A. Van Thiel, N. S. Scrutton, D. Leys
Date
:
21 Jun 05 (Deposition) - 05 Jul 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.11
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Electron Transfer, Mobile Domain, Conformational Sampling, Electron Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. S. Toogood, A. Van Thiel, N. S. Scrutton, D. Leys
Stabilization Of Non-Productive Conformations Underpins Rapid Electron Transfer To Electron-Transferring Flavoprotein
J. Biol. Chem. V. 280 30361 2005
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: ADENOSINE MONOPHOSPHATE (AMPa)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AMP
1
Ligand/Ion
ADENOSINE MONOPHOSPHATE
2
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:208 , GLY A:222 , ARG A:223 , GLY A:224 , SER A:248 , ARG A:249 , ALA A:250 , GLN A:262 , VAL A:263 , GLY A:264 , GLN A:265 , THR A:266 , GLY A:267 , GLY A:279 , ILE A:280 , SER A:281 , GLN A:285 , HIS A:286 , ASN A:300 , LYS A:301 , ASP A:302 , ALA A:317 , ASP A:318 , LEU A:319 , HOH A:619 , HOH A:634 , LEU B:185
BINDING SITE FOR RESIDUE FAD A 599
2
AC2
SOFTWARE
ALA B:9 , VAL B:10 , LYS B:11 , ASN B:39 , CYS B:42 , CYS B:66 , VAL B:104 , LEU B:122 , GLY B:123 , GLN B:125 , ALA B:126 , ASP B:129 , CYS B:131 , ASN B:132 , GLN B:133 , THR B:134 , HOH B:617
BINDING SITE FOR RESIDUE AMP B 600
[
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SAPs(SNPs)/Variants
(7, 7)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_002366 (G116R, chain A, )
2: VAR_025804 (D128N, chain B, )
3: VAR_008548 (T154M, chain B, )
4: VAR_002367 (V157G, chain A, )
5: VAR_002369 (R164Q, chain B, )
6: VAR_008547 (T171I, chain A, )
7: VAR_002368 (T266M, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_002366
G
116
R
ETFA_HUMAN
Disease (GA2A)
---
A
G
116
R
2
UniProt
VAR_025804
D
128
N
ETFB_HUMAN
Disease (GA2B)
---
B
D
128
N
3
UniProt
VAR_008548
T
154
M
ETFB_HUMAN
Polymorphism
1130426
B
T
154
M
4
UniProt
VAR_002367
V
157
G
ETFA_HUMAN
Disease (GA2A)
---
A
V
157
G
5
UniProt
VAR_002369
R
164
Q
ETFB_HUMAN
Disease (GA2B)
104894677
B
R
164
Q
6
UniProt
VAR_008547
T
171
I
ETFA_HUMAN
Polymorphism
1801591
A
T
171
I
7
UniProt
VAR_002368
T
266
M
ETFA_HUMAN
Disease (GA2A)
---
A
T
266
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: ETF_BETA (B:162-182)
2: ETF_ALPHA (A:274-300)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ETF_BETA
PS01065
Electron transfer flavoprotein beta-subunit signature.
ETFB_HUMAN
162-182
1
B:162-182
2
ETF_ALPHA
PS00696
Electron transfer flavoprotein alpha-subunit signature.
ETFA_HUMAN
274-300
1
A:274-300
[
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Exons
(6, 6)
Info
All Exons
Exon 1.1 (B:4-19)
Exon 1.2b (B:20-72)
Exon 1.3 (B:73-125)
Exon 1.4 (B:126-146)
Exon 1.5 (B:147-199)
Exon 1.6 (B:200-255)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2b
3: Boundary 1.2b/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000309244
1
ENSE00001384271
chr19:
51869672-51869524
149
ETFB_HUMAN
1-19
19
1
B:4-19
16
1.2b
ENST00000309244
2b
ENSE00001225639
chr19:
51857562-51857404
159
ETFB_HUMAN
20-72
53
1
B:20-72
53
1.3
ENST00000309244
3
ENSE00000722381
chr19:
51856544-51856386
159
ETFB_HUMAN
73-125
53
1
B:73-125
53
1.4
ENST00000309244
4
ENSE00000722391
chr19:
51853645-51853583
63
ETFB_HUMAN
126-146
21
1
B:126-146
21
1.5
ENST00000309244
5
ENSE00000722401
chr19:
51850312-51850154
159
ETFB_HUMAN
147-199
53
1
B:147-199
53
1.6
ENST00000309244
6
ENSE00001471664
chr19:
51848635-51848410
226
ETFB_HUMAN
200-255
56
1
B:200-255
56
[
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]
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d2a1ua1 (A:19-207)
1b: SCOP_d2a1ub_ (B:)
2a: SCOP_d2a1ua2 (A:208-333)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Adenine nucleotide alpha hydrolases-like
(110)
Family
:
ETFP subunits
(25)
Protein domain
:
automated matches
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2a1ua1
A:19-207
1b
d2a1ub_
B:
Fold
:
DHS-like NAD/FAD-binding domain
(176)
Superfamily
:
DHS-like NAD/FAD-binding domain
(176)
Family
:
automated matches
(36)
Protein domain
:
automated matches
(36)
Human (Homo sapiens) [TaxId: 9606]
(12)
2a
d2a1ua2
A:208-333
[
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_2a1uA02 (A:205-333)
2a: CATH_2a1uA01 (A:19-204)
2b: CATH_2a1uB00 (B:4-255)
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
TPP-binding domain
(120)
Human (Homo sapiens)
(9)
1a
2a1uA02
A:205-333
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Human (Homo sapiens)
(27)
2a
2a1uA01
A:19-204
2b
2a1uB00
B:4-255
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Atom Selection
(currently selected atoms:
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Protein
Nucleic
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Solvent
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
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Asymmetric Unit 1
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Asym.Unit (97 KB)
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