PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2A07
Asym. Unit
Info
Asym.Unit (135 KB)
Biol.Unit 1 (130 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF FOXP2 BOUND SPECIFICALLY TO DNA.
Authors
:
J. C. Stroud, Y. Wu, D. L. Bates, A. Han, K. Nowick, S. Paabo, H. Tong, L. Chen
Date
:
16 Jun 05 (Deposition) - 31 Jan 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,F,G,H,I,J,K
Biol. Unit 1: A,B,C,D,F,G,H,I,J,K (1x)
Keywords
:
Forkhead, Double-Helix, Swapping, Homodimer, Monomer, Winged-Helix, Magnesium, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. C. Stroud, Y. Wu, D. L. Bates, A. Han, K. Nowick, S. Paabo, H. Tong, L. Chen
Structure Of The Forkhead Domain Of Foxp2 Bound To Dna.
Structure V. 14 159 2006
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 6)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
1e: MAGNESIUM ION (MGe)
1f: MAGNESIUM ION (MGf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
6
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER F:557 , LEU F:558 , HIS F:559 , HOH F:613
BINDING SITE FOR RESIDUE MG F 601
2
AC2
SOFTWARE
HOH H:397 , LEU H:556 , HIS H:559 , PHE H:562
BINDING SITE FOR RESIDUE MG H 602
3
AC3
SOFTWARE
SER I:557 , LEU I:558 , HIS I:559
BINDING SITE FOR RESIDUE MG I 603
4
AC4
SOFTWARE
LEU G:556 , HIS G:559 , PHE G:562
BINDING SITE FOR RESIDUE MG G 604
5
AC5
SOFTWARE
LEU J:556 , SER J:557 , HIS J:559 , PHE J:562 , HOH J:673
BINDING SITE FOR RESIDUE MG J 605
6
AC6
SOFTWARE
HOH D:24 , LEU K:556 , SER K:557 , HIS K:559 , PHE K:562 , HOH K:645
BINDING SITE FOR RESIDUE MG K 606
[
close Site info
]
SAPs(SNPs)/Variants
(1, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_012278 (R553H, chain F/G/H/I/J/K, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_012278
R
553
H
FOXP2_HUMAN
Disease (SPCH1)
---
F/G/H/I/J/K
R
553
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 10)
Info
All PROSITE Patterns/Profiles
1: FORK_HEAD_3 (F:504-577,I:504-577,J:504-577,K:50...)
2: FORK_HEAD_2 (F:548-554,G:548-554,H:548-554,I:54...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FORK_HEAD_3
PS50039
Fork head domain profile.
FOXP2_HUMAN
504-577
4
F:504-577
I:504-577
J:504-577
K:504-577
2
FORK_HEAD_2
PS00658
Fork head domain signature 2.
FOXP2_HUMAN
548-554
6
F:548-554
G:548-554
H:548-554
I:548-554
J:548-554
K:548-554
[
close PROSITE info
]
Exons
(3, 18)
Info
All Exons
Exon 1.25 (F:503-515 | G:506-515 | H:506-515 ...)
Exon 1.26 (F:516-549 | G:516-549 | H:516-549 ...)
Exon 1.27 (F:550-584 | G:550-584 | H:550-584 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.24/1.25
2: Boundary 1.25/1.26
3: Boundary 1.26/1.27
4: Boundary 1.27/1.28
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.7
ENST00000393494
7
ENSE00001558209
chr7:
114054329-114054597
269
FOXP2_HUMAN
-
0
0
-
-
1.9c
ENST00000393494
9c
ENSE00002190822
chr7:
114066557-114066734
178
FOXP2_HUMAN
1-56
56
0
-
-
1.12
ENST00000393494
12
ENSE00001772837
chr7:
114174672-114174761
90
FOXP2_HUMAN
57-86
30
0
-
-
1.15a
ENST00000393494
15a
ENSE00001601293
chr7:
114268595-114268732
138
FOXP2_HUMAN
87-132
46
0
-
-
1.17b
ENST00000393494
17b
ENSE00001723496
chr7:
114269860-114270060
201
FOXP2_HUMAN
133-199
67
0
-
-
1.18d
ENST00000393494
18d
ENSE00001596482
chr7:
114271583-114271760
178
FOXP2_HUMAN
200-259
60
0
-
-
1.19b
ENST00000393494
19b
ENSE00001636514
chr7:
114282465-114282678
214
FOXP2_HUMAN
259-330
72
0
-
-
1.20a
ENST00000393494
20a
ENSE00001695866
chr7:
114284740-114284844
105
FOXP2_HUMAN
330-365
36
0
-
-
1.21
ENST00000393494
21
ENSE00001798613
chr7:
114292258-114292345
88
FOXP2_HUMAN
365-394
30
0
-
-
1.22a
ENST00000393494
22a
ENSE00001643159
chr7:
114293981-114294064
84
FOXP2_HUMAN
395-422
28
0
-
-
1.24
ENST00000393494
24
ENSE00001726579
chr7:
114298121-114298322
202
FOXP2_HUMAN
423-490
68
0
-
-
1.25
ENST00000393494
25
ENSE00001610854
chr7:
114299411-114299487
77
FOXP2_HUMAN
490-515
26
6
F:503-515
G:506-515
H:506-515
I:503-515
J:502-515
K:502-515
13
10
10
13
14
14
1.26
ENST00000393494
26
ENSE00001721811
chr7:
114299627-114299728
102
FOXP2_HUMAN
516-549
34
6
F:516-549
G:516-549
H:516-549
I:516-549
J:516-549
K:516-549
34
34
34
34
34
34
1.27
ENST00000393494
27
ENSE00001699074
chr7:
114302120-114302241
122
FOXP2_HUMAN
550-590
41
6
F:550-584
G:550-584
H:550-584
I:550-583
J:550-584
K:550-584
35
35
35
34
35
35
1.28
ENST00000393494
28
ENSE00001726203
chr7:
114303505-114303574
70
FOXP2_HUMAN
590-613
24
0
-
-
1.29a
ENST00000393494
29a
ENSE00001774863
chr7:
114304328-114304491
164
FOXP2_HUMAN
614-668
55
0
-
-
1.30d
ENST00000393494
30d
ENSE00001515519
chr7:
114329837-114330218
382
FOXP2_HUMAN
668-715
48
0
-
-
[
close EXON info
]
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d2a07g_ (G:)
1b: SCOP_d2a07k_ (K:)
1c: SCOP_d2a07h_ (H:)
1d: SCOP_d2a07i_ (I:)
1e: SCOP_d2a07j_ (J:)
2a: SCOP_d2a07f1 (F:503-584)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
automated matches
(118)
Protein domain
:
automated matches
(118)
Human (Homo sapiens) [TaxId: 9606]
(10)
1a
d2a07g_
G:
1b
d2a07k_
K:
1c
d2a07h_
H:
1d
d2a07i_
I:
1e
d2a07j_
J:
Family
:
Forkhead DNA-binding domain
(17)
Protein domain
:
Forkhead box protein P2, FOXP2
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d2a07f1
F:503-584
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (135 KB)
Header - Asym.Unit
Biol.Unit 1 (130 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2A07
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help