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1ZYE
Biol. Unit 1
Info
Asym.Unit (315 KB)
Biol.Unit 1 (601 KB)
Biol.Unit 2 (303 KB)
Biol.Unit 3 (54 KB)
Biol.Unit 4 (54 KB)
Biol.Unit 5 (55 KB)
Biol.Unit 6 (55 KB)
Biol.Unit 7 (55 KB)
Biol.Unit 8 (55 KB)
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(1)
Title
:
CRYSTAL STRUCUTRE ANALYSIS OF BOVINE MITOCHONDRIAL PEROXIREDOXIN III
Authors
:
Z. Cao, A. W. Roszak, L. J. Gourlay, J. G. Lindsay, N. W. Isaacs
Date
:
10 Jun 05 (Deposition) - 20 Sep 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (2x)
Biol. Unit 2: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Biol. Unit 3: A,B (1x)
Biol. Unit 4: C,D (1x)
Biol. Unit 5: E,F (1x)
Biol. Unit 6: G,H (1x)
Biol. Unit 7: I,J (1x)
Biol. Unit 8: K,L (1x)
Keywords
:
Catenane, Dodecamer, Peroxiredoxin, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
Z. Cao, A. W. Roszak, L. J. Gourlay, J. G. Lindsay, N. W. Isaacs
Bovine Mitochondrial Peroxiredoxin Iii Forms A Two-Ring Catenane
Structure V. 13 1661 2005
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Hetero Components
(0, 0)
Info
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 24)
Info
All PROSITE Patterns/Profiles
1: THIOREDOXIN_2 (A:2-160,B:2-160,C:2-160,D:2-160,E:...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOREDOXIN_2
PS51352
Thioredoxin domain profile.
PRDX3_BOVIN
64-222
24
A:2-160
B:2-160
C:2-160
D:2-160
E:2-160
F:2-160
G:2-160
H:2-160
I:2-160
J:2-160
K:2-160
L:2-160
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d1zyea1 (A:6-163)
1b: SCOP_d1zyeb1 (B:6-163)
1c: SCOP_d1zyek1 (K:6-163)
1d: SCOP_d1zyel1 (L:6-163)
1e: SCOP_d1zyec1 (C:6-163)
1f: SCOP_d1zyed1 (D:6-163)
1g: SCOP_d1zyee1 (E:6-163)
1h: SCOP_d1zyef1 (F:6-163)
1i: SCOP_d1zyeg1 (G:6-163)
1j: SCOP_d1zyeh1 (H:6-163)
1k: SCOP_d1zyei1 (I:6-163)
1l: SCOP_d1zyej1 (J:6-163)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione peroxidase-like
(136)
Protein domain
:
Peroxiredoxin-3 (AOP-1, SP-22)
(1)
Cow (Bos taurus) [TaxId: 9913]
(1)
1a
d1zyea1
A:6-163
1b
d1zyeb1
B:6-163
1c
d1zyek1
K:6-163
1d
d1zyel1
L:6-163
1e
d1zyec1
C:6-163
1f
d1zyed1
D:6-163
1g
d1zyee1
E:6-163
1h
d1zyef1
F:6-163
1i
d1zyeg1
G:6-163
1j
d1zyeh1
H:6-163
1k
d1zyei1
I:6-163
1l
d1zyej1
J:6-163
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CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1zyeA00 (A:2-163)
1b: CATH_1zyeG00 (G:2-163)
1c: CATH_1zyeH00 (H:2-163)
1d: CATH_1zyeI00 (I:2-163)
1e: CATH_1zyeJ00 (J:2-163)
1f: CATH_1zyeK00 (K:2-163)
1g: CATH_1zyeL00 (L:2-163)
1h: CATH_1zyeB00 (B:2-163)
1i: CATH_1zyeC00 (C:2-163)
1j: CATH_1zyeD00 (D:2-163)
1k: CATH_1zyeE00 (E:2-163)
1l: CATH_1zyeF00 (F:2-163)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Cattle (Bos taurus)
(5)
1a
1zyeA00
A:2-163
1b
1zyeG00
G:2-163
1c
1zyeH00
H:2-163
1d
1zyeI00
I:2-163
1e
1zyeJ00
J:2-163
1f
1zyeK00
K:2-163
1g
1zyeL00
L:2-163
1h
1zyeB00
B:2-163
1i
1zyeC00
C:2-163
1j
1zyeD00
D:2-163
1k
1zyeE00
E:2-163
1l
1zyeF00
F:2-163
[
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Pfam Domains
(2, 24)
Info
all PFAM domains
1a: PFAM_AhpC_TSA_1zyeL01 (L:4-137)
1b: PFAM_AhpC_TSA_1zyeL02 (L:4-137)
1c: PFAM_AhpC_TSA_1zyeL03 (L:4-137)
1d: PFAM_AhpC_TSA_1zyeL04 (L:4-137)
1e: PFAM_AhpC_TSA_1zyeL05 (L:4-137)
1f: PFAM_AhpC_TSA_1zyeL06 (L:4-137)
1g: PFAM_AhpC_TSA_1zyeL07 (L:4-137)
1h: PFAM_AhpC_TSA_1zyeL08 (L:4-137)
1i: PFAM_AhpC_TSA_1zyeL09 (L:4-137)
1j: PFAM_AhpC_TSA_1zyeL10 (L:4-137)
1k: PFAM_AhpC_TSA_1zyeL11 (L:4-137)
1l: PFAM_AhpC_TSA_1zyeL12 (L:4-137)
2a: PFAM_1_cysPrx_C_1zyeL13 (L:157-163)
2b: PFAM_1_cysPrx_C_1zyeL14 (L:157-163)
2c: PFAM_1_cysPrx_C_1zyeL15 (L:157-163)
2d: PFAM_1_cysPrx_C_1zyeL16 (L:157-163)
2e: PFAM_1_cysPrx_C_1zyeL17 (L:157-163)
2f: PFAM_1_cysPrx_C_1zyeL18 (L:157-163)
2g: PFAM_1_cysPrx_C_1zyeL19 (L:157-163)
2h: PFAM_1_cysPrx_C_1zyeL20 (L:157-163)
2i: PFAM_1_cysPrx_C_1zyeL21 (L:157-163)
2j: PFAM_1_cysPrx_C_1zyeL22 (L:157-163)
2k: PFAM_1_cysPrx_C_1zyeL23 (L:157-163)
2l: PFAM_1_cysPrx_C_1zyeL24 (L:157-163)
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Clans
(
)
(
)
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)
(
)
Organisms
(
)
(
)
Clan
:
Thioredoxin
(367)
Family
:
AhpC-TSA
(28)
Bos taurus (Bovine)
(1)
1a
AhpC-TSA-1zyeL01
L:4-137
1b
AhpC-TSA-1zyeL02
L:4-137
1c
AhpC-TSA-1zyeL03
L:4-137
1d
AhpC-TSA-1zyeL04
L:4-137
1e
AhpC-TSA-1zyeL05
L:4-137
1f
AhpC-TSA-1zyeL06
L:4-137
1g
AhpC-TSA-1zyeL07
L:4-137
1h
AhpC-TSA-1zyeL08
L:4-137
1i
AhpC-TSA-1zyeL09
L:4-137
1j
AhpC-TSA-1zyeL10
L:4-137
1k
AhpC-TSA-1zyeL11
L:4-137
1l
AhpC-TSA-1zyeL12
L:4-137
Clan
:
no clan defined [family: 1-cysPrx_C]
(19)
Family
:
1-cysPrx_C
(19)
Bos taurus (Bovine)
(1)
2a
1-cysPrx_C-1zyeL13
L:157-163
2b
1-cysPrx_C-1zyeL14
L:157-163
2c
1-cysPrx_C-1zyeL15
L:157-163
2d
1-cysPrx_C-1zyeL16
L:157-163
2e
1-cysPrx_C-1zyeL17
L:157-163
2f
1-cysPrx_C-1zyeL18
L:157-163
2g
1-cysPrx_C-1zyeL19
L:157-163
2h
1-cysPrx_C-1zyeL20
L:157-163
2i
1-cysPrx_C-1zyeL21
L:157-163
2j
1-cysPrx_C-1zyeL22
L:157-163
2k
1-cysPrx_C-1zyeL23
L:157-163
2l
1-cysPrx_C-1zyeL24
L:157-163
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