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1ZUD
Biol. Unit 2
Info
Asym.Unit (110 KB)
Biol.Unit 1 (104 KB)
Biol.Unit 2 (55 KB)
Biol.Unit 3 (52 KB)
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(1)
Title
:
STRUCTURE OF THIS-THIF PROTEIN COMPLEX
Authors
:
S. E. Ealick, C. Lehmann
Date
:
30 May 05 (Deposition) - 31 Jan 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.98
Chains
:
Asym. Unit : 1,2,3,4
Biol. Unit 1: 1,2,3,4 (1x)
Biol. Unit 2: 3,4 (1x)
Biol. Unit 3: 1,2 (1x)
Keywords
:
Thiamin, Thiazole, Protein-Protein Complex, This, Thif, Transferase- Biosynthetic Protein Complex
(Keyword Search:
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Reference
:
C. Lehmann, T. P. Begley, S. E. Ealick
Structure Of The Escherichia Coli This-Thif Complex, A Key Component Of The Sulfur Transfer System In Thiamin Biosynthesis.
Biochemistry V. 45 11 2006
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
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Sites
(4, 4)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC4 (SOFTWARE)
4: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
CYS 3:169 , CYS 3:172 , CYS 3:240 , CYS 3:243
BINDING SITE FOR RESIDUE ZN 3 502
2
AC3
SOFTWARE
LEU 1:14 , ASP 1:16 , HOH 1:704 , LEU 3:14 , ASP 3:16 , HOH 3:764
BINDING SITE FOR RESIDUE CA 3 601
3
AC4
SOFTWARE
CYS 1:243 , HOH 1:800 , HOH 1:801 , HOH 1:802 , HOH 3:772 , HOH 3:809 , HOH 3:810
BINDING SITE FOR RESIDUE CA 1 602
4
AC6
SOFTWARE
VAL 3:116 , ALA 3:117 , ALA 3:119 , THR 3:144 , HOH 3:796 , HOH 3:808
BINDING SITE FOR RESIDUE NA 3 702
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1zud2_ (2:)
1b: SCOP_d1zud4_ (4:)
2a: SCOP_d1zud1_ (1:)
2b: SCOP_d1zud3_ (3:)
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Classes
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
MoaD/ThiS
(25)
Family
:
ThiS
(8)
Protein domain
:
Thiamin biosynthesis sulfur carrier protein ThiS
(3)
Escherichia coli [TaxId: 562]
(2)
1a
d1zud2_
2:
1b
d1zud4_
4:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Activating enzymes of the ubiquitin-like proteins
(27)
Superfamily
:
Activating enzymes of the ubiquitin-like proteins
(27)
Family
:
automated matches
(3)
Protein domain
:
automated matches
(3)
Escherichia coli K-12 [TaxId: 83333]
(1)
2a
d1zud1_
1:
2b
d1zud3_
3:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1zud100 (1:1-245)
1b: CATH_1zud300 (3:1-245)
2a: CATH_1zud400 (4:1-66)
2b: CATH_1zud200 (2:2-66)
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Homologous Superfamilies
(
)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Escherichia coli k12. Organism_taxid: 83333. Strain: k12.
(1)
1a
1zud100
1:1-245
1b
1zud300
3:1-245
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
[code=3.10.20.30, no name defined]
(153)
Escherichia coli k12. Organism_taxid: 83333. Strain: k12.
(1)
2a
1zud400
4:1-66
2b
1zud200
2:2-66
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_ThiF_1zud301 (3:27-161)
1b: PFAM_ThiF_1zud302 (3:27-161)
2a: PFAM_ThiS_1zud401 (4:3-66)
2b: PFAM_ThiS_1zud402 (4:3-66)
3a: PFAM_MoeZ_MoeB_1zud303 (3:166-245)
3b: PFAM_MoeZ_MoeB_1zud304 (3:166-245)
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Clans
(
)
(
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
ThiF
(14)
Escherichia coli (strain K12)
(6)
1a
ThiF-1zud301
3:27-161
1b
ThiF-1zud302
3:27-161
Clan
:
Ubiquitin
(279)
Family
:
ThiS
(18)
Escherichia coli (strain K12)
(5)
2a
ThiS-1zud401
4:3-66
2b
ThiS-1zud402
4:3-66
Clan
:
no clan defined [family: MoeZ_MoeB]
(6)
Family
:
MoeZ_MoeB
(6)
Escherichia coli (strain K12)
(6)
3a
MoeZ_MoeB-1zud303
3:166-245
3b
MoeZ_MoeB-1zud304
3:166-245
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Asym.Unit (110 KB)
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