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1ZHS
Biol. Unit 3
Info
Asym.Unit (188 KB)
Biol.Unit 1 (49 KB)
Biol.Unit 2 (49 KB)
Biol.Unit 3 (49 KB)
Biol.Unit 4 (49 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MVL BOUND TO MAN3GLCNAC2
Authors
:
D. C. Williams, J. Y. Lee, M. Cai, C. A. Bewley, G. M. Clore
Date
:
26 Apr 05 (Deposition) - 07 Jun 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Mvl, Hiv-1, Carbohydrate Binding, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. C. Williams, J. Y. Lee, M. Cai, C. A. Bewley, G. M. Clore
Crystal Structures Of The Hiv-1 Inhibitory Cyanobacterial Protein Mvl Free And Bound To Man3Glcnac2: Structural Basis For Specificity And High-Affinity Binding To The Core Pentasaccharide From N-Linked Oligomannoside.
J. Biol. Chem. V. 280 29269 2005
[
close entry info
]
Hetero Components
(5, 27)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
1h: BETA-D-MANNOSE (BMAh)
1i: BETA-D-MANNOSE (BMAi)
1j: BETA-D-MANNOSE (BMAj)
1k: BETA-D-MANNOSE (BMAk)
1l: BETA-D-MANNOSE (BMAl)
1m: BETA-D-MANNOSE (BMAm)
1n: BETA-D-MANNOSE (BMAn)
1o: BETA-D-MANNOSE (BMAo)
1p: BETA-D-MANNOSE (BMAp)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
2y: 1,2-ETHANEDIOL (EDOy)
2z: 1,2-ETHANEDIOL (EDOz)
3a: ALPHA-D-MANNOSE (MANa)
3aa: ALPHA-D-MANNOSE (MANaa)
3ab: ALPHA-D-MANNOSE (MANab)
3ac: ALPHA-D-MANNOSE (MANac)
3ad: ALPHA-D-MANNOSE (MANad)
3ae: ALPHA-D-MANNOSE (MANae)
3af: ALPHA-D-MANNOSE (MANaf)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
3f: ALPHA-D-MANNOSE (MANf)
3g: ALPHA-D-MANNOSE (MANg)
3h: ALPHA-D-MANNOSE (MANh)
3i: ALPHA-D-MANNOSE (MANi)
3j: ALPHA-D-MANNOSE (MANj)
3k: ALPHA-D-MANNOSE (MANk)
3l: ALPHA-D-MANNOSE (MANl)
3m: ALPHA-D-MANNOSE (MANm)
3n: ALPHA-D-MANNOSE (MANn)
3o: ALPHA-D-MANNOSE (MANo)
3p: ALPHA-D-MANNOSE (MANp)
3q: ALPHA-D-MANNOSE (MANq)
3r: ALPHA-D-MANNOSE (MANr)
3s: ALPHA-D-MANNOSE (MANs)
3t: ALPHA-D-MANNOSE (MANt)
3u: ALPHA-D-MANNOSE (MANu)
3v: ALPHA-D-MANNOSE (MANv)
3w: ALPHA-D-MANNOSE (MANw)
3x: ALPHA-D-MANNOSE (MANx)
3y: ALPHA-D-MANNOSE (MANy)
3z: ALPHA-D-MANNOSE (MANz)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
4ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
4ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
4ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
4ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
4af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
4q: N-ACETYL-D-GLUCOSAMINE (NAGq)
4r: N-ACETYL-D-GLUCOSAMINE (NAGr)
4s: N-ACETYL-D-GLUCOSAMINE (NAGs)
4t: N-ACETYL-D-GLUCOSAMINE (NAGt)
4u: N-ACETYL-D-GLUCOSAMINE (NAGu)
4v: N-ACETYL-D-GLUCOSAMINE (NAGv)
4w: N-ACETYL-D-GLUCOSAMINE (NAGw)
4x: N-ACETYL-D-GLUCOSAMINE (NAGx)
4y: N-ACETYL-D-GLUCOSAMINE (NAGy)
4z: N-ACETYL-D-GLUCOSAMINE (NAGz)
5a: PHOSPHATE ION (PO4a)
5b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
4
Ligand/Ion
BETA-D-MANNOSE
2
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
3
MAN
8
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
PO4
1
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(37, 37)
Info
All Sites
01: BC7 (SOFTWARE)
02: BC9 (SOFTWARE)
03: CC1 (SOFTWARE)
04: CC8 (SOFTWARE)
05: CC9 (SOFTWARE)
06: DC2 (SOFTWARE)
07: EC5 (SOFTWARE)
08: EC6 (SOFTWARE)
09: EC7 (SOFTWARE)
10: EC8 (SOFTWARE)
11: EC9 (SOFTWARE)
12: FC1 (SOFTWARE)
13: FC2 (SOFTWARE)
14: FC3 (SOFTWARE)
15: FC4 (SOFTWARE)
16: FC5 (SOFTWARE)
17: FC6 (SOFTWARE)
18: FC7 (SOFTWARE)
19: FC8 (SOFTWARE)
20: FC9 (SOFTWARE)
21: GC1 (SOFTWARE)
22: GC2 (SOFTWARE)
23: GC3 (SOFTWARE)
24: GC4 (SOFTWARE)
25: GC5 (SOFTWARE)
26: GC6 (SOFTWARE)
27: HC8 (SOFTWARE)
28: HC9 (SOFTWARE)
29: JC1 (SOFTWARE)
30: JC3 (SOFTWARE)
31: JC4 (SOFTWARE)
32: JC5 (SOFTWARE)
33: KC1 (SOFTWARE)
34: KC2 (SOFTWARE)
35: LC4 (SOFTWARE)
36: LC5 (SOFTWARE)
37: LC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC7
SOFTWARE
LEU B:71 , TRP B:72 , TRP B:96 , THR B:98 , GLU B:101 , GLY B:102 , SER B:105 , NAG B:212 , ALA E:16
BINDING SITE FOR RESIDUE NAG B 211
02
BC9
SOFTWARE
ASN B:74 , GLN B:95 , TRP B:96 , NAG B:212 , MAN B:214 , MAN B:215 , HOH B:853 , HOH B:867 , HOH E:878
BINDING SITE FOR RESIDUE BMA B 213
03
CC1
SOFTWARE
BMA B:213 , EDO B:824 , NAG E:211
BINDING SITE FOR RESIDUE MAN B 214
04
CC8
SOFTWARE
LEU C:71 , TRP C:72 , TRP C:96 , THR C:98 , GLY C:102 , NAG C:212 , HOH C:837 , HOH F:893 , ALA H:16
BINDING SITE FOR RESIDUE NAG C 211
05
CC9
SOFTWARE
ILE B:59 , SER C:73 , ASN C:74 , TRP C:96 , ARG C:97 , THR C:98 , NAG C:211 , BMA C:213 , HOH C:846 , GLU F:55
BINDING SITE FOR RESIDUE NAG C 212
06
DC2
SOFTWARE
BMA C:213 , EDO C:814 , HOH C:852 , HOH C:866 , HOH C:892 , HOH C:903 , PRO E:11
BINDING SITE FOR RESIDUE MAN C 214
07
EC5
SOFTWARE
LEU E:12 , TRP E:13 , TRP E:37 , THR E:39 , GLU E:42 , SER E:43 , NAG E:202
BINDING SITE FOR RESIDUE NAG E 201
08
EC6
SOFTWARE
SER E:14 , ASN E:15 , TRP E:37 , THR E:38 , THR E:39 , NAG E:201 , BMA E:203 , HOH E:877 , HOH E:881
BINDING SITE FOR RESIDUE NAG E 202
09
EC7
SOFTWARE
ASN E:15 , GLY E:35 , GLN E:36 , TRP E:37 , NAG E:202 , MAN E:204 , MAN E:205
BINDING SITE FOR RESIDUE BMA E 203
10
EC8
SOFTWARE
THR E:38 , BMA E:203
BINDING SITE FOR RESIDUE MAN E 204
11
EC9
SOFTWARE
GLY E:35 , GLN E:36 , BMA E:203
BINDING SITE FOR RESIDUE MAN E 205
12
FC1
SOFTWARE
MAN B:214 , HOH B:897 , LEU E:71 , TRP E:72 , TRP E:96 , THR E:98 , GLU E:101 , GLY E:102 , NAG E:212 , HOH E:876
BINDING SITE FOR RESIDUE NAG E 211
13
FC2
SOFTWARE
SER E:73 , ASN E:74 , TRP E:96 , ARG E:97 , THR E:98 , NAG E:211 , BMA E:213 , PO4 E:702 , EDO E:802 , HOH E:840 , HOH E:856 , HOH E:866
BINDING SITE FOR RESIDUE NAG E 212
14
FC3
SOFTWARE
ASN E:74 , GLN E:95 , TRP E:96 , NAG E:212 , MAN E:214 , MAN E:215 , PO4 E:702 , HOH E:840 , HOH E:869
BINDING SITE FOR RESIDUE BMA E 213
15
FC4
SOFTWARE
ARG E:97 , BMA E:213 , EDO E:803
BINDING SITE FOR RESIDUE MAN E 214
16
FC5
SOFTWARE
ARG A:97 , PHE B:62 , LYS B:63 , HOH B:848 , ASN E:74 , GLN E:78 , GLY E:94 , GLN E:95 , BMA E:213 , HOH E:850 , HOH E:868 , HOH E:879
BINDING SITE FOR RESIDUE MAN E 215
17
FC6
SOFTWARE
LEU F:12 , TRP F:13 , TRP F:37 , THR F:39 , SER F:43 , NAG F:202
BINDING SITE FOR RESIDUE NAG F 201
18
FC7
SOFTWARE
SER F:14 , ASN F:15 , TRP F:37 , THR F:38 , THR F:39 , NAG F:201 , BMA F:203
BINDING SITE FOR RESIDUE NAG F 202
19
FC8
SOFTWARE
ASN F:15 , GLN F:36 , TRP F:37 , NAG F:202 , MAN F:204 , MAN F:205
BINDING SITE FOR RESIDUE BMA F 203
20
FC9
SOFTWARE
THR F:38 , BMA F:203
BINDING SITE FOR RESIDUE MAN F 204
21
GC1
SOFTWARE
ASN F:15 , GLY F:35 , GLN F:36 , BMA F:203 , HOH F:891
BINDING SITE FOR RESIDUE MAN F 205
22
GC2
SOFTWARE
ALA A:16 , LEU F:71 , TRP F:72 , TRP F:96 , THR F:98 , GLU F:101 , GLY F:102 , NAG F:212 , HOH F:854
BINDING SITE FOR RESIDUE NAG F 211
23
GC3
SOFTWARE
GLU C:55 , SER F:73 , ASN F:74 , TRP F:96 , ARG F:97 , THR F:98 , NAG F:211 , BMA F:213 , HOH F:847
BINDING SITE FOR RESIDUE NAG F 212
24
GC4
SOFTWARE
ASN F:74 , GLY F:94 , GLN F:95 , TRP F:96 , NAG F:212 , MAN F:214 , MAN F:215 , HOH F:847 , HOH F:880 , HOH F:884
BINDING SITE FOR RESIDUE BMA F 213
25
GC5
SOFTWARE
BMA F:213 , EDO F:804 , HOH F:904
BINDING SITE FOR RESIDUE MAN F 214
26
GC6
SOFTWARE
GLY F:94 , GLN F:95 , BMA F:213 , HOH F:881 , HOH F:889 , HOH F:898
BINDING SITE FOR RESIDUE MAN F 215
27
HC8
SOFTWARE
ILE F:59 , LEU H:12 , TRP H:13 , TRP H:37 , THR H:39 , GLU H:42 , SER H:43 , NAG H:202 , HOH H:843
BINDING SITE FOR RESIDUE NAG H 201
28
HC9
SOFTWARE
ILE F:59 , SER H:14 , ASN H:15 , TRP H:37 , THR H:38 , THR H:39 , NAG H:201 , BMA H:203 , HOH H:841 , HOH H:844 , HOH H:867
BINDING SITE FOR RESIDUE NAG H 202
29
JC1
SOFTWARE
GLN B:108 , NAG E:212 , BMA E:213 , HOH E:840
BINDING SITE FOR RESIDUE PO4 E 702
30
JC3
SOFTWARE
LYS B:63 , THR B:64 , ASP B:65 , GLN B:108 , EDO B:824 , NAG E:212
BINDING SITE FOR RESIDUE EDO E 802
31
JC4
SOFTWARE
ASP E:65 , GLN E:95 , TRP E:96 , ARG E:97 , MAN E:214
BINDING SITE FOR RESIDUE EDO E 803
32
JC5
SOFTWARE
ASP F:65 , TRP F:96 , ARG F:97 , MAN F:214
BINDING SITE FOR RESIDUE EDO F 804
33
KC1
SOFTWARE
PHE B:33 , THR B:34 , TRP E:72 , GLU E:76 , LYS F:24 , HOH F:871 , HOH F:879
BINDING SITE FOR RESIDUE EDO F 809
34
KC2
SOFTWARE
GLN B:30 , GLY B:31 , ASN B:32 , GLU B:51 , LEU B:52 , GLN B:53 , GLY E:102
BINDING SITE FOR RESIDUE EDO B 810
35
LC4
SOFTWARE
HIS E:29 , SER E:87 , TYR E:88 , HOH E:826 , HOH E:830 , HOH E:874
BINDING SITE FOR RESIDUE EDO E 821
36
LC5
SOFTWARE
HIS F:29 , SER F:87 , TYR F:88 , HOH F:825 , HOH F:833
BINDING SITE FOR RESIDUE EDO F 822
37
LC7
SOFTWARE
ASP B:65 , GLN B:95 , TRP B:96 , ARG B:97 , MAN B:214 , EDO E:802
BINDING SITE FOR RESIDUE EDO B 824
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(1, 16)
Info
all PFAM domains
1a: PFAM_MVL_1zhsH01 (H:74-110)
1b: PFAM_MVL_1zhsH02 (H:74-110)
1c: PFAM_MVL_1zhsH03 (H:74-110)
1d: PFAM_MVL_1zhsH04 (H:74-110)
1e: PFAM_MVL_1zhsH05 (H:74-110)
1f: PFAM_MVL_1zhsH06 (H:74-110)
1g: PFAM_MVL_1zhsH07 (H:74-110)
1h: PFAM_MVL_1zhsH08 (H:74-110)
1i: PFAM_MVL_1zhsH09 (H:74-110)
1j: PFAM_MVL_1zhsH10 (H:74-110)
1k: PFAM_MVL_1zhsH11 (H:74-110)
1l: PFAM_MVL_1zhsH12 (H:74-110)
1m: PFAM_MVL_1zhsH13 (H:74-110)
1n: PFAM_MVL_1zhsH14 (H:74-110)
1o: PFAM_MVL_1zhsH15 (H:74-110)
1p: PFAM_MVL_1zhsH16 (H:74-110)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: MVL]
(2)
Family
:
MVL
(2)
Microcystis viridis
(2)
1a
MVL-1zhsH01
H:74-110
1b
MVL-1zhsH02
H:74-110
1c
MVL-1zhsH03
H:74-110
1d
MVL-1zhsH04
H:74-110
1e
MVL-1zhsH05
H:74-110
1f
MVL-1zhsH06
H:74-110
1g
MVL-1zhsH07
H:74-110
1h
MVL-1zhsH08
H:74-110
1i
MVL-1zhsH09
H:74-110
1j
MVL-1zhsH10
H:74-110
1k
MVL-1zhsH11
H:74-110
1l
MVL-1zhsH12
H:74-110
1m
MVL-1zhsH13
H:74-110
1n
MVL-1zhsH14
H:74-110
1o
MVL-1zhsH15
H:74-110
1p
MVL-1zhsH16
H:74-110
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Asym.Unit (188 KB)
Header - Asym.Unit
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