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(-) Description

Title :  CRYSTAL STRUCTURE OF MVL BOUND TO MAN3GLCNAC2
 
Authors :  D. C. Williams, J. Y. Lee, M. Cai, C. A. Bewley, G. M. Clore
Date :  26 Apr 05  (Deposition) - 07 Jun 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Mvl, Hiv-1, Carbohydrate Binding, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. C. Williams, J. Y. Lee, M. Cai, C. A. Bewley, G. M. Clore
Crystal Structures Of The Hiv-1 Inhibitory Cyanobacterial Protein Mvl Free And Bound To Man3Glcnac2: Structural Basis For Specificity And High-Affinity Binding To The Core Pentasaccharide From N-Linked Oligomannoside.
J. Biol. Chem. V. 280 29269 2005
PubMed-ID: 15937331  |  Reference-DOI: 10.1074/JBC.M504642200

(-) Compounds

Molecule 1 - MANNAN-BINDING LECTIN
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: MICROCYSTIS VIRIDIS
    Organism Taxid: 44822
    Synonym: MVL

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 108)

Asymmetric Unit (5, 108)
No.NameCountTypeFull Name
1BMA16Ligand/IonBETA-D-MANNOSE
2EDO26Ligand/Ion1,2-ETHANEDIOL
3MAN32Ligand/IonALPHA-D-MANNOSE
4NAG32Ligand/IonN-ACETYL-D-GLUCOSAMINE
5PO42Ligand/IonPHOSPHATE ION
Biological Unit 1 (4, 27)
No.NameCountTypeFull Name
1BMA4Ligand/IonBETA-D-MANNOSE
2EDO7Ligand/Ion1,2-ETHANEDIOL
3MAN8Ligand/IonALPHA-D-MANNOSE
4NAG8Ligand/IonN-ACETYL-D-GLUCOSAMINE
5PO4-1Ligand/IonPHOSPHATE ION
Biological Unit 2 (4, 25)
No.NameCountTypeFull Name
1BMA4Ligand/IonBETA-D-MANNOSE
2EDO5Ligand/Ion1,2-ETHANEDIOL
3MAN8Ligand/IonALPHA-D-MANNOSE
4NAG8Ligand/IonN-ACETYL-D-GLUCOSAMINE
5PO4-1Ligand/IonPHOSPHATE ION
Biological Unit 3 (5, 27)
No.NameCountTypeFull Name
1BMA4Ligand/IonBETA-D-MANNOSE
2EDO6Ligand/Ion1,2-ETHANEDIOL
3MAN8Ligand/IonALPHA-D-MANNOSE
4NAG8Ligand/IonN-ACETYL-D-GLUCOSAMINE
5PO41Ligand/IonPHOSPHATE ION
Biological Unit 4 (5, 29)
No.NameCountTypeFull Name
1BMA4Ligand/IonBETA-D-MANNOSE
2EDO8Ligand/Ion1,2-ETHANEDIOL
3MAN8Ligand/IonALPHA-D-MANNOSE
4NAG8Ligand/IonN-ACETYL-D-GLUCOSAMINE
5PO41Ligand/IonPHOSPHATE ION

(-) Sites  (108, 108)

Asymmetric Unit (108, 108)
No.NameEvidenceResiduesDescription
001AC1SOFTWARELEU A:12 , TRP A:13 , TRP A:37 , THR A:39 , GLU A:42 , SER A:43 , NAG A:202 , HOH A:845 , ILE C:59 , EDO G:807BINDING SITE FOR RESIDUE NAG A 201
002AC2SOFTWARESER A:14 , ASN A:15 , TRP A:37 , THR A:38 , THR A:39 , NAG A:201 , BMA A:203 , HOH A:823 , HOH A:827 , HOH A:875 , ILE C:59BINDING SITE FOR RESIDUE NAG A 202
003AC3SOFTWAREASN A:15 , GLN A:36 , TRP A:37 , NAG A:202 , MAN A:204 , MAN A:205 , HOH A:823 , HOH A:891BINDING SITE FOR RESIDUE BMA A 203
004AC4SOFTWARETHR A:38 , BMA A:203 , EDO A:805BINDING SITE FOR RESIDUE MAN A 204
005AC5SOFTWAREGLY A:35 , GLN A:36 , BMA A:203 , HOH A:867BINDING SITE FOR RESIDUE MAN A 205
006AC6SOFTWARELEU A:71 , TRP A:72 , TRP A:96 , THR A:98 , GLU A:101 , GLY A:102 , NAG A:212BINDING SITE FOR RESIDUE NAG A 211
007AC7SOFTWARESER A:73 , ASN A:74 , TRP A:96 , ARG A:97 , THR A:98 , NAG A:211 , BMA A:213 , HOH A:838 , HOH A:849 , HOH A:882BINDING SITE FOR RESIDUE NAG A 212
008AC8SOFTWAREASN A:74 , GLN A:95 , TRP A:96 , NAG A:212 , MAN A:214 , MAN A:215 , HOH A:838BINDING SITE FOR RESIDUE BMA A 213
009AC9SOFTWAREARG A:97 , BMA A:213 , EDO A:801 , HOH A:881BINDING SITE FOR RESIDUE MAN A 214
010BC1SOFTWAREGLY A:94 , GLN A:95 , BMA A:213 , HOH A:848BINDING SITE FOR RESIDUE MAN A 215
011BC2SOFTWARELEU B:12 , TRP B:13 , TRP B:37 , THR B:39 , GLU B:42 , SER B:43 , NAG B:202BINDING SITE FOR RESIDUE NAG B 201
012BC3SOFTWARESER B:14 , ASN B:15 , TRP B:37 , THR B:38 , THR B:39 , NAG B:201 , BMA B:203 , HOH B:860 , HOH B:891BINDING SITE FOR RESIDUE NAG B 202
013BC4SOFTWAREASN B:15 , GLN B:36 , TRP B:37 , NAG B:202 , MAN B:204 , MAN B:205 , HOH B:860 , HOH B:874 , HOH B:889BINDING SITE FOR RESIDUE BMA B 203
014BC5SOFTWARETHR B:38 , BMA B:203BINDING SITE FOR RESIDUE MAN B 204
015BC6SOFTWAREGLY B:35 , GLN B:36 , BMA B:203 , HOH B:857BINDING SITE FOR RESIDUE MAN B 205
016BC7SOFTWARELEU B:71 , TRP B:72 , TRP B:96 , THR B:98 , GLU B:101 , GLY B:102 , SER B:105 , NAG B:212 , ALA E:16BINDING SITE FOR RESIDUE NAG B 211
017BC8SOFTWARESER B:73 , ASN B:74 , TRP B:96 , ARG B:97 , THR B:98 , NAG B:211 , BMA B:213 , HOH B:853 , HOH B:871 , HOH B:876BINDING SITE FOR RESIDUE NAG B 212
018BC9SOFTWAREASN B:74 , GLN B:95 , TRP B:96 , NAG B:212 , MAN B:214 , MAN B:215 , HOH B:853 , HOH B:867 , HOH E:878BINDING SITE FOR RESIDUE BMA B 213
019CC1SOFTWAREBMA B:213 , EDO B:824 , NAG E:211BINDING SITE FOR RESIDUE MAN B 214
020CC2SOFTWAREGLY B:94 , GLN B:95 , BMA B:213 , HOH B:868 , HOH B:894BINDING SITE FOR RESIDUE MAN B 215
021CC3SOFTWARELEU C:12 , TRP C:13 , TRP C:37 , THR C:39 , SER C:43 , SER C:46 , NAG C:202BINDING SITE FOR RESIDUE NAG C 201
022CC4SOFTWARESER C:14 , ASN C:15 , TRP C:37 , THR C:38 , THR C:39 , NAG C:201 , BMA C:203 , HOH C:875BINDING SITE FOR RESIDUE NAG C 202
023CC5SOFTWAREASN C:15 , GLN C:36 , TRP C:37 , NAG C:202 , MAN C:204 , MAN C:205BINDING SITE FOR RESIDUE BMA C 203
024CC6SOFTWARETHR C:38 , BMA C:203BINDING SITE FOR RESIDUE MAN C 204
025CC7SOFTWAREGLY C:35 , GLN C:36 , BMA C:203BINDING SITE FOR RESIDUE MAN C 205
026CC8SOFTWARELEU C:71 , TRP C:72 , TRP C:96 , THR C:98 , GLY C:102 , NAG C:212 , HOH C:837 , HOH F:893 , ALA H:16BINDING SITE FOR RESIDUE NAG C 211
027CC9SOFTWAREILE B:59 , SER C:73 , ASN C:74 , TRP C:96 , ARG C:97 , THR C:98 , NAG C:211 , BMA C:213 , HOH C:846 , GLU F:55BINDING SITE FOR RESIDUE NAG C 212
028DC1SOFTWAREASN C:74 , GLN C:95 , TRP C:96 , NAG C:212 , MAN C:214 , MAN C:215 , HOH C:846BINDING SITE FOR RESIDUE BMA C 213
029DC2SOFTWAREBMA C:213 , EDO C:814 , HOH C:852 , HOH C:866 , HOH C:892 , HOH C:903 , PRO E:11BINDING SITE FOR RESIDUE MAN C 214
030DC3SOFTWAREGLY C:94 , GLN C:95 , BMA C:213 , HOH C:865 , HOH C:886BINDING SITE FOR RESIDUE MAN C 215
031DC4SOFTWARELEU D:12 , TRP D:13 , TRP D:37 , THR D:39 , SER D:43 , SER D:46 , NAG D:202 , HOH D:861BINDING SITE FOR RESIDUE NAG D 201
032DC5SOFTWARESER D:14 , ASN D:15 , TRP D:37 , THR D:38 , THR D:39 , NAG D:201 , BMA D:203 , HOH D:867 , HOH D:875 , HOH D:885BINDING SITE FOR RESIDUE NAG D 202
033DC6SOFTWAREASN D:15 , GLN D:36 , TRP D:37 , NAG D:202 , MAN D:204 , MAN D:205 , HOH D:867BINDING SITE FOR RESIDUE BMA D 203
034DC7SOFTWARETHR D:38 , BMA D:203 , EDO D:816BINDING SITE FOR RESIDUE MAN D 204
035DC8SOFTWAREGLY D:35 , GLN D:36 , BMA D:203BINDING SITE FOR RESIDUE MAN D 205
036DC9SOFTWARELEU D:71 , TRP D:72 , TRP D:96 , THR D:98 , GLU D:101 , GLY D:102 , NAG D:212 , MAN G:214 , EDO G:812BINDING SITE FOR RESIDUE NAG D 211
037EC1SOFTWARESER D:73 , ASN D:74 , TRP D:96 , ARG D:97 , THR D:98 , NAG D:211 , BMA D:213 , HOH D:822 , HOH D:837 , HOH D:850 , HOH D:884 , PO4 G:701 , EDO G:812BINDING SITE FOR RESIDUE NAG D 212
038EC2SOFTWAREASN D:74 , GLY D:94 , GLN D:95 , TRP D:96 , NAG D:212 , MAN D:214 , MAN D:215 , HOH D:837 , PO4 G:701 , HOH G:870BINDING SITE FOR RESIDUE BMA D 213
039EC3SOFTWAREARG D:97 , BMA D:213 , EDO D:815BINDING SITE FOR RESIDUE MAN D 214
040EC4SOFTWAREASN D:74 , GLN D:78 , GLY D:94 , GLN D:95 , BMA D:213 , HOH D:880 , HOH D:892 , PHE G:62 , LYS G:63BINDING SITE FOR RESIDUE MAN D 215
041EC5SOFTWARELEU E:12 , TRP E:13 , TRP E:37 , THR E:39 , GLU E:42 , SER E:43 , NAG E:202BINDING SITE FOR RESIDUE NAG E 201
042EC6SOFTWARESER E:14 , ASN E:15 , TRP E:37 , THR E:38 , THR E:39 , NAG E:201 , BMA E:203 , HOH E:877 , HOH E:881BINDING SITE FOR RESIDUE NAG E 202
043EC7SOFTWAREASN E:15 , GLY E:35 , GLN E:36 , TRP E:37 , NAG E:202 , MAN E:204 , MAN E:205BINDING SITE FOR RESIDUE BMA E 203
044EC8SOFTWARETHR E:38 , BMA E:203BINDING SITE FOR RESIDUE MAN E 204
045EC9SOFTWAREGLY E:35 , GLN E:36 , BMA E:203BINDING SITE FOR RESIDUE MAN E 205
046FC1SOFTWAREMAN B:214 , HOH B:897 , LEU E:71 , TRP E:72 , TRP E:96 , THR E:98 , GLU E:101 , GLY E:102 , NAG E:212 , HOH E:876BINDING SITE FOR RESIDUE NAG E 211
047FC2SOFTWARESER E:73 , ASN E:74 , TRP E:96 , ARG E:97 , THR E:98 , NAG E:211 , BMA E:213 , PO4 E:702 , EDO E:802 , HOH E:840 , HOH E:856 , HOH E:866BINDING SITE FOR RESIDUE NAG E 212
048FC3SOFTWAREASN E:74 , GLN E:95 , TRP E:96 , NAG E:212 , MAN E:214 , MAN E:215 , PO4 E:702 , HOH E:840 , HOH E:869BINDING SITE FOR RESIDUE BMA E 213
049FC4SOFTWAREARG E:97 , BMA E:213 , EDO E:803BINDING SITE FOR RESIDUE MAN E 214
050FC5SOFTWAREARG A:97 , PHE B:62 , LYS B:63 , HOH B:848 , ASN E:74 , GLN E:78 , GLY E:94 , GLN E:95 , BMA E:213 , HOH E:850 , HOH E:868 , HOH E:879BINDING SITE FOR RESIDUE MAN E 215
051FC6SOFTWARELEU F:12 , TRP F:13 , TRP F:37 , THR F:39 , SER F:43 , NAG F:202BINDING SITE FOR RESIDUE NAG F 201
052FC7SOFTWARESER F:14 , ASN F:15 , TRP F:37 , THR F:38 , THR F:39 , NAG F:201 , BMA F:203BINDING SITE FOR RESIDUE NAG F 202
053FC8SOFTWAREASN F:15 , GLN F:36 , TRP F:37 , NAG F:202 , MAN F:204 , MAN F:205BINDING SITE FOR RESIDUE BMA F 203
054FC9SOFTWARETHR F:38 , BMA F:203BINDING SITE FOR RESIDUE MAN F 204
055GC1SOFTWAREASN F:15 , GLY F:35 , GLN F:36 , BMA F:203 , HOH F:891BINDING SITE FOR RESIDUE MAN F 205
056GC2SOFTWAREALA A:16 , LEU F:71 , TRP F:72 , TRP F:96 , THR F:98 , GLU F:101 , GLY F:102 , NAG F:212 , HOH F:854BINDING SITE FOR RESIDUE NAG F 211
057GC3SOFTWAREGLU C:55 , SER F:73 , ASN F:74 , TRP F:96 , ARG F:97 , THR F:98 , NAG F:211 , BMA F:213 , HOH F:847BINDING SITE FOR RESIDUE NAG F 212
058GC4SOFTWAREASN F:74 , GLY F:94 , GLN F:95 , TRP F:96 , NAG F:212 , MAN F:214 , MAN F:215 , HOH F:847 , HOH F:880 , HOH F:884BINDING SITE FOR RESIDUE BMA F 213
059GC5SOFTWAREBMA F:213 , EDO F:804 , HOH F:904BINDING SITE FOR RESIDUE MAN F 214
060GC6SOFTWAREGLY F:94 , GLN F:95 , BMA F:213 , HOH F:881 , HOH F:889 , HOH F:898BINDING SITE FOR RESIDUE MAN F 215
061GC7SOFTWAREHOH A:885 , GLU B:17 , LEU G:12 , TRP G:13 , TRP G:37 , THR G:39 , SER G:43 , NAG G:202 , HOH G:888 , HOH G:890BINDING SITE FOR RESIDUE NAG G 201
062GC8SOFTWARETRP B:13 , SER G:14 , ASN G:15 , TRP G:37 , THR G:38 , THR G:39 , NAG G:201 , BMA G:203 , HOH G:846 , HOH G:851 , HOH G:856 , HOH G:871 , HOH G:904BINDING SITE FOR RESIDUE NAG G 202
063GC9SOFTWAREASN G:15 , GLY G:35 , GLN G:36 , TRP G:37 , NAG G:202 , MAN G:204 , MAN G:205 , HOH G:846 , HOH G:872BINDING SITE FOR RESIDUE BMA G 203
064HC1SOFTWARETHR G:38 , BMA G:203BINDING SITE FOR RESIDUE MAN G 204
065HC2SOFTWAREGLN G:36 , BMA G:203 , HOH G:899BINDING SITE FOR RESIDUE MAN G 205
066HC3SOFTWAREALA D:16 , LEU G:71 , TRP G:72 , TRP G:96 , THR G:98 , GLU G:101 , GLY G:102 , NAG G:212BINDING SITE FOR RESIDUE NAG G 211
067HC4SOFTWARESER G:73 , ASN G:74 , TRP G:96 , ARG G:97 , THR G:98 , NAG G:211 , BMA G:213 , HOH G:850 , HOH G:864 , HOH G:874BINDING SITE FOR RESIDUE NAG G 212
068HC5SOFTWAREASN G:74 , GLN G:95 , TRP G:96 , NAG G:212 , MAN G:214 , MAN G:215 , HOH G:850 , HOH G:885 , HOH G:898BINDING SITE FOR RESIDUE BMA G 213
069HC6SOFTWARENAG D:211 , BMA G:213 , EDO G:812 , EDO G:826BINDING SITE FOR RESIDUE MAN G 214
070HC7SOFTWAREGLY G:94 , GLN G:95 , BMA G:213 , HOH G:855 , HOH G:889BINDING SITE FOR RESIDUE MAN G 215
071HC8SOFTWAREILE F:59 , LEU H:12 , TRP H:13 , TRP H:37 , THR H:39 , GLU H:42 , SER H:43 , NAG H:202 , HOH H:843BINDING SITE FOR RESIDUE NAG H 201
072HC9SOFTWAREILE F:59 , SER H:14 , ASN H:15 , TRP H:37 , THR H:38 , THR H:39 , NAG H:201 , BMA H:203 , HOH H:841 , HOH H:844 , HOH H:867BINDING SITE FOR RESIDUE NAG H 202
073IC1SOFTWAREASN H:15 , GLY H:35 , GLN H:36 , TRP H:37 , NAG H:202 , MAN H:204 , MAN H:205 , HOH H:844 , HOH H:893 , HOH H:895BINDING SITE FOR RESIDUE BMA H 203
074IC2SOFTWARETHR H:38 , BMA H:203BINDING SITE FOR RESIDUE MAN H 204
075IC3SOFTWAREHOH C:836 , GLY H:35 , GLN H:36 , BMA H:203BINDING SITE FOR RESIDUE MAN H 205
076IC4SOFTWARELEU H:71 , TRP H:72 , TRP H:96 , THR H:98 , GLU H:101 , GLY H:102 , NAG H:212BINDING SITE FOR RESIDUE NAG H 211
077IC5SOFTWARESER H:73 , ASN H:74 , TRP H:96 , ARG H:97 , THR H:98 , NAG H:211 , BMA H:213BINDING SITE FOR RESIDUE NAG H 212
078IC6SOFTWAREASN H:74 , GLN H:95 , TRP H:96 , NAG H:212 , MAN H:214 , MAN H:215BINDING SITE FOR RESIDUE BMA H 213
079IC7SOFTWAREARG H:97 , BMA H:213BINDING SITE FOR RESIDUE MAN H 214
080IC8SOFTWAREASN H:74 , GLN H:78 , GLY H:94 , GLN H:95 , BMA H:213BINDING SITE FOR RESIDUE MAN H 215
081IC9SOFTWARENAG D:212 , BMA D:213 , HOH D:837 , GLN G:108 , EDO G:812BINDING SITE FOR RESIDUE PO4 G 701
082JC1SOFTWAREGLN B:108 , NAG E:212 , BMA E:213 , HOH E:840BINDING SITE FOR RESIDUE PO4 E 702
083JC2SOFTWAREASP A:65 , TRP A:96 , ARG A:97 , MAN A:214BINDING SITE FOR RESIDUE EDO A 801
084JC3SOFTWARELYS B:63 , THR B:64 , ASP B:65 , GLN B:108 , EDO B:824 , NAG E:212BINDING SITE FOR RESIDUE EDO E 802
085JC4SOFTWAREASP E:65 , GLN E:95 , TRP E:96 , ARG E:97 , MAN E:214BINDING SITE FOR RESIDUE EDO E 803
086JC5SOFTWAREASP F:65 , TRP F:96 , ARG F:97 , MAN F:214BINDING SITE FOR RESIDUE EDO F 804
087JC6SOFTWAREASN A:6 , GLN A:36 , TRP A:37 , THR A:38 , GLU A:49 , MAN A:204BINDING SITE FOR RESIDUE EDO A 805
088JC7SOFTWARELYS A:4 , ASN A:6 , GLU A:49 , HOH A:868 , ASN B:6 , HOH B:838BINDING SITE FOR RESIDUE EDO A 806
089JC8SOFTWARETRP A:13 , NAG A:201 , ILE C:59 , ALA G:1 , GLN G:53 , VAL G:54 , GLU G:55BINDING SITE FOR RESIDUE EDO G 807
090JC9SOFTWAREVAL G:54 , GLU G:55 , ASN G:56 , GLY G:89 , ALA G:90 , HOH G:869BINDING SITE FOR RESIDUE EDO G 808
091KC1SOFTWAREPHE B:33 , THR B:34 , TRP E:72 , GLU E:76 , LYS F:24 , HOH F:871 , HOH F:879BINDING SITE FOR RESIDUE EDO F 809
092KC2SOFTWAREGLN B:30 , GLY B:31 , ASN B:32 , GLU B:51 , LEU B:52 , GLN B:53 , GLY E:102BINDING SITE FOR RESIDUE EDO B 810
093KC3SOFTWAREHIS G:29 , SER G:87 , TYR G:88 , HOH G:830 , HOH G:833BINDING SITE FOR RESIDUE EDO G 811
094KC4SOFTWARENAG D:211 , NAG D:212 , GLN G:95 , GLN G:108 , MAN G:214 , PO4 G:701 , EDO G:826BINDING SITE FOR RESIDUE EDO G 812
095KC5SOFTWAREGLY D:102 , GLN G:30 , ASN G:32 , GLU G:51 , LEU G:52 , GLN G:53BINDING SITE FOR RESIDUE EDO G 813
096KC6SOFTWAREASP C:65 , TRP C:96 , ARG C:97 , GLN C:108 , MAN C:214BINDING SITE FOR RESIDUE EDO C 814
097KC7SOFTWAREASP D:65 , GLN D:95 , TRP D:96 , ARG D:97 , MAN D:214BINDING SITE FOR RESIDUE EDO D 815
098KC8SOFTWAREASN D:6 , GLN D:36 , TRP D:37 , THR D:38 , GLU D:49 , MAN D:204 , HOH D:890BINDING SITE FOR RESIDUE EDO D 816
099KC9SOFTWAREHIS A:29 , SER A:87 , HOH A:818 , HOH A:820BINDING SITE FOR RESIDUE EDO A 817
100LC1SOFTWAREPRO A:8 , HIS B:29 , SER B:87 , HOH B:833 , HOH B:845BINDING SITE FOR RESIDUE EDO B 818
101LC2SOFTWAREHIS C:29 , LEU C:52 , SER C:87 , TYR C:88 , HOH C:826 , HOH C:827BINDING SITE FOR RESIDUE EDO C 819
102LC3SOFTWAREHIS D:29 , SER D:87 , TYR D:88 , HOH D:830 , HOH D:834BINDING SITE FOR RESIDUE EDO D 820
103LC4SOFTWAREHIS E:29 , SER E:87 , TYR E:88 , HOH E:826 , HOH E:830 , HOH E:874BINDING SITE FOR RESIDUE EDO E 821
104LC5SOFTWAREHIS F:29 , SER F:87 , TYR F:88 , HOH F:825 , HOH F:833BINDING SITE FOR RESIDUE EDO F 822
105LC6SOFTWAREHIS H:29 , SER H:87 , TYR H:88 , HOH H:828 , HOH H:829BINDING SITE FOR RESIDUE EDO H 823
106LC7SOFTWAREASP B:65 , GLN B:95 , TRP B:96 , ARG B:97 , MAN B:214 , EDO E:802BINDING SITE FOR RESIDUE EDO B 824
107LC8SOFTWAREASP H:65 , GLN H:95 , TRP H:96 , ARG H:97BINDING SITE FOR RESIDUE EDO H 825
108LC9SOFTWAREASP G:65 , GLN G:95 , TRP G:96 , ARG G:97 , MAN G:214 , EDO G:812BINDING SITE FOR RESIDUE EDO G 826

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZHS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1ZHS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZHS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1ZHS)

(-) Exons   (0, 0)

(no "Exon" information available for 1ZHS)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:113
 aligned with MVL_MICVR | Q9RHG4 from UniProtKB/Swiss-Prot  Length:114

    Alignment length:113
                                    11        21        31        41        51        61        71        81        91       101       111   
            MVL_MICVR     2 ASYKVNIPAGPLWSNAEAQQVGPKIAAAHQGNFTGQWTTVVESAMSVVEVELQVENTGIHEFKTDVLAGPLWSNDEAQKLGPQIAASYGAEFTGQWRTIVEGVMSVIQIKYTF 114
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee...hhhhhhhhhhhhhhhh..eeeeeeeeee...eeeeeeeee......eeeeeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeee...eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 1zhs A   1 ASYKVNIPAGPLWSNAEAQQVGPKIAAAHQGNFTGQWTTVVESAMSVVEVELQVENTGIHEFKTDVLAGPLWSNDEAQKLGPQIAASYGAEFTGQWRTIVEGVMSVIQIKYTF 113
                                    10        20        30        40        50        60        70        80        90       100       110   


Chain B from PDB  Type:PROTEIN  Length:113
 aligned with MVL_MICVR | Q9RHG4 from UniProtKB/Swiss-Prot  Length:114

    Alignment length:113
                                    11        21        31        41        51        61        71        81        91       101       111   
            MVL_MICVR     2 ASYKVNIPAGPLWSNAEAQQVGPKIAAAHQGNFTGQWTTVVESAMSVVEVELQVENTGIHEFKTDVLAGPLWSNDEAQKLGPQIAASYGAEFTGQWRTIVEGVMSVIQIKYTF 114
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee...hhhhhhhhhhhhhhhh..eeeeeeeeee...eeeeeeeee......eeeeeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeee...eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 1zhs B   1 ASYKVNIPAGPLWSNAEAQQVGPKIAAAHQGNFTGQWTTVVESAMSVVEVELQVENTGIHEFKTDVLAGPLWSNDEAQKLGPQIAASYGAEFTGQWRTIVEGVMSVIQIKYTF 113
                                    10        20        30        40        50        60        70        80        90       100       110   


Chain C from PDB  Type:PROTEIN  Length:113
 aligned with MVL_MICVR | Q9RHG4 from UniProtKB/Swiss-Prot  Length:114

    Alignment length:113
                                    11        21        31        41        51        61        71        81        91       101       111   
            MVL_MICVR     2 ASYKVNIPAGPLWSNAEAQQVGPKIAAAHQGNFTGQWTTVVESAMSVVEVELQVENTGIHEFKTDVLAGPLWSNDEAQKLGPQIAASYGAEFTGQWRTIVEGVMSVIQIKYTF 114
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee...hhhhhhhhhhhhhhhh..eeeeeeeeee...eeeeeeeee......eeeeeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeee...eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 1zhs C   1 ASYKVNIPAGPLWSNAEAQQVGPKIAAAHQGNFTGQWTTVVESAMSVVEVELQVENTGIHEFKTDVLAGPLWSNDEAQKLGPQIAASYGAEFTGQWRTIVEGVMSVIQIKYTF 113
                                    10        20        30        40        50        60        70        80        90       100       110   


Chain D from PDB  Type:PROTEIN  Length:113
 aligned with MVL_MICVR | Q9RHG4 from UniProtKB/Swiss-Prot  Length:114

    Alignment length:113
                                    11        21        31        41        51        61        71        81        91       101       111   
            MVL_MICVR     2 ASYKVNIPAGPLWSNAEAQQVGPKIAAAHQGNFTGQWTTVVESAMSVVEVELQVENTGIHEFKTDVLAGPLWSNDEAQKLGPQIAASYGAEFTGQWRTIVEGVMSVIQIKYTF 114
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee...hhhhhhhhhhhhhhhh..eeeeeeeeee...eeeeeeeee......eeeeeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeee...eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 1zhs D   1 ASYKVNIPAGPLWSNAEAQQVGPKIAAAHQGNFTGQWTTVVESAMSVVEVELQVENTGIHEFKTDVLAGPLWSNDEAQKLGPQIAASYGAEFTGQWRTIVEGVMSVIQIKYTF 113
                                    10        20        30        40        50        60        70        80        90       100       110   


Chain E from PDB  Type:PROTEIN  Length:113
 aligned with MVL_MICVR | Q9RHG4 from UniProtKB/Swiss-Prot  Length:114

    Alignment length:113
                                    11        21        31        41        51        61        71        81        91       101       111   
            MVL_MICVR     2 ASYKVNIPAGPLWSNAEAQQVGPKIAAAHQGNFTGQWTTVVESAMSVVEVELQVENTGIHEFKTDVLAGPLWSNDEAQKLGPQIAASYGAEFTGQWRTIVEGVMSVIQIKYTF 114
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee...hhhhhhhhhhhhhhhh..eeeeeeeeee...eeeeeeeee......eeeeeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeee...eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 1zhs E   1 ASYKVNIPAGPLWSNAEAQQVGPKIAAAHQGNFTGQWTTVVESAMSVVEVELQVENTGIHEFKTDVLAGPLWSNDEAQKLGPQIAASYGAEFTGQWRTIVEGVMSVIQIKYTF 113
                                    10        20        30        40        50        60        70        80        90       100       110   


Chain F from PDB  Type:PROTEIN  Length:113
 aligned with MVL_MICVR | Q9RHG4 from UniProtKB/Swiss-Prot  Length:114

    Alignment length:113
                                    11        21        31        41        51        61        71        81        91       101       111   
            MVL_MICVR     2 ASYKVNIPAGPLWSNAEAQQVGPKIAAAHQGNFTGQWTTVVESAMSVVEVELQVENTGIHEFKTDVLAGPLWSNDEAQKLGPQIAASYGAEFTGQWRTIVEGVMSVIQIKYTF 114
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee...hhhhhhhhhhhhhhhh..eeeeeeeeee...eeeeeeeee......eeeeeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeee...eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 1zhs F   1 ASYKVNIPAGPLWSNAEAQQVGPKIAAAHQGNFTGQWTTVVESAMSVVEVELQVENTGIHEFKTDVLAGPLWSNDEAQKLGPQIAASYGAEFTGQWRTIVEGVMSVIQIKYTF 113
                                    10        20        30        40        50        60        70        80        90       100       110   


Chain G from PDB  Type:PROTEIN  Length:113
 aligned with MVL_MICVR | Q9RHG4 from UniProtKB/Swiss-Prot  Length:114

    Alignment length:113
                                    11        21        31        41        51        61        71        81        91       101       111   
            MVL_MICVR     2 ASYKVNIPAGPLWSNAEAQQVGPKIAAAHQGNFTGQWTTVVESAMSVVEVELQVENTGIHEFKTDVLAGPLWSNDEAQKLGPQIAASYGAEFTGQWRTIVEGVMSVIQIKYTF 114
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee...hhhhhhhhhhhhhhhh..eeeeeeeeee...eeeeeeeee......eeeeeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeee...eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 1zhs G   1 ASYKVNIPAGPLWSNAEAQQVGPKIAAAHQGNFTGQWTTVVESAMSVVEVELQVENTGIHEFKTDVLAGPLWSNDEAQKLGPQIAASYGAEFTGQWRTIVEGVMSVIQIKYTF 113
                                    10        20        30        40        50        60        70        80        90       100       110   


Chain H from PDB  Type:PROTEIN  Length:113
 aligned with MVL_MICVR | Q9RHG4 from UniProtKB/Swiss-Prot  Length:114

    Alignment length:113
                                    11        21        31        41        51        61        71        81        91       101       111   
            MVL_MICVR     2 ASYKVNIPAGPLWSNAEAQQVGPKIAAAHQGNFTGQWTTVVESAMSVVEVELQVENTGIHEFKTDVLAGPLWSNDEAQKLGPQIAASYGAEFTGQWRTIVEGVMSVIQIKYTF 114
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------------------------------------------------------------------------MVL-1zhsH01 H:74-110                 --- Pfam domains (1)
           Pfam domains (2) -------------------------------------------------------------------------MVL-1zhsH02 H:74-110                 --- Pfam domains (2)
           Pfam domains (3) -------------------------------------------------------------------------MVL-1zhsH03 H:74-110                 --- Pfam domains (3)
           Pfam domains (4) -------------------------------------------------------------------------MVL-1zhsH04 H:74-110                 --- Pfam domains (4)
           Pfam domains (5) -------------------------------------------------------------------------MVL-1zhsH05 H:74-110                 --- Pfam domains (5)
           Pfam domains (6) -------------------------------------------------------------------------MVL-1zhsH06 H:74-110                 --- Pfam domains (6)
           Pfam domains (7) -------------------------------------------------------------------------MVL-1zhsH07 H:74-110                 --- Pfam domains (7)
           Pfam domains (8) -------------------------------------------------------------------------MVL-1zhsH08 H:74-110                 --- Pfam domains (8)
           Pfam domains (9) -------------------------------------------------------------------------MVL-1zhsH09 H:74-110                 --- Pfam domains (9)
          Pfam domains (10) -------------------------------------------------------------------------MVL-1zhsH10 H:74-110                 --- Pfam domains (10)
          Pfam domains (11) -------------------------------------------------------------------------MVL-1zhsH11 H:74-110                 --- Pfam domains (11)
          Pfam domains (12) -------------------------------------------------------------------------MVL-1zhsH12 H:74-110                 --- Pfam domains (12)
          Pfam domains (13) -------------------------------------------------------------------------MVL-1zhsH13 H:74-110                 --- Pfam domains (13)
          Pfam domains (14) -------------------------------------------------------------------------MVL-1zhsH14 H:74-110                 --- Pfam domains (14)
          Pfam domains (15) -------------------------------------------------------------------------MVL-1zhsH15 H:74-110                 --- Pfam domains (15)
          Pfam domains (16) -------------------------------------------------------------------------MVL-1zhsH16 H:74-110                 --- Pfam domains (16)
         Sec.struct. author .eeeeeeeee...hhhhhhhhhhhhhhhh..eeeeeeeeee...eeeeeeeee......eeeeeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeee...eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 1zhs H   1 ASYKVNIPAGPLWSNAEAQQVGPKIAAAHQGNFTGQWTTVVESAMSVVEVELQVENTGIHEFKTDVLAGPLWSNDEAQKLGPQIAASYGAEFTGQWRTIVEGVMSVIQIKYTF 113
                                    10        20        30        40        50        60        70        80        90       100       110
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1ZHS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1ZHS)

(-) Pfam Domains  (1, 16)

Asymmetric Unit
(-)
Clan: no clan defined [family: MVL] (2)
(-)
Family: MVL (2)
(-)
Microcystis viridis (2)
1aMVL-1zhsH01H:74-110
1bMVL-1zhsH02H:74-110
1cMVL-1zhsH03H:74-110
1dMVL-1zhsH04H:74-110
1eMVL-1zhsH05H:74-110
1fMVL-1zhsH06H:74-110
1gMVL-1zhsH07H:74-110
1hMVL-1zhsH08H:74-110
1iMVL-1zhsH09H:74-110
1jMVL-1zhsH10H:74-110
1kMVL-1zhsH11H:74-110
1lMVL-1zhsH12H:74-110
1mMVL-1zhsH13H:74-110
1nMVL-1zhsH14H:74-110
1oMVL-1zhsH15H:74-110
1pMVL-1zhsH16H:74-110

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (MVL_MICVR | Q9RHG4)
molecular function
    GO:0030246    carbohydrate binding    Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016798    hydrolase activity, acting on glycosyl bonds    Catalysis of the hydrolysis of any glycosyl bond.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0050688    regulation of defense response to virus    Any process that modulates the frequency, rate or extent of the antiviral response of a cell or organism.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  Cis Peptide Bonds
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  1zhs
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  MVL_MICVR | Q9RHG4
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MVL_MICVR | Q9RHG4: 1zhq

(-) Related Entries Specified in the PDB File

1zhq APO STRUCTURE