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1ZHS
Biol. Unit 1
Info
Asym.Unit (188 KB)
Biol.Unit 1 (49 KB)
Biol.Unit 2 (49 KB)
Biol.Unit 3 (49 KB)
Biol.Unit 4 (49 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MVL BOUND TO MAN3GLCNAC2
Authors
:
D. C. Williams, J. Y. Lee, M. Cai, C. A. Bewley, G. M. Clore
Date
:
26 Apr 05 (Deposition) - 07 Jun 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Mvl, Hiv-1, Carbohydrate Binding, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. C. Williams, J. Y. Lee, M. Cai, C. A. Bewley, G. M. Clore
Crystal Structures Of The Hiv-1 Inhibitory Cyanobacterial Protein Mvl Free And Bound To Man3Glcnac2: Structural Basis For Specificity And High-Affinity Binding To The Core Pentasaccharide From N-Linked Oligomannoside.
J. Biol. Chem. V. 280 29269 2005
[
close entry info
]
Hetero Components
(4, 27)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
1h: BETA-D-MANNOSE (BMAh)
1i: BETA-D-MANNOSE (BMAi)
1j: BETA-D-MANNOSE (BMAj)
1k: BETA-D-MANNOSE (BMAk)
1l: BETA-D-MANNOSE (BMAl)
1m: BETA-D-MANNOSE (BMAm)
1n: BETA-D-MANNOSE (BMAn)
1o: BETA-D-MANNOSE (BMAo)
1p: BETA-D-MANNOSE (BMAp)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
2y: 1,2-ETHANEDIOL (EDOy)
2z: 1,2-ETHANEDIOL (EDOz)
3a: ALPHA-D-MANNOSE (MANa)
3aa: ALPHA-D-MANNOSE (MANaa)
3ab: ALPHA-D-MANNOSE (MANab)
3ac: ALPHA-D-MANNOSE (MANac)
3ad: ALPHA-D-MANNOSE (MANad)
3ae: ALPHA-D-MANNOSE (MANae)
3af: ALPHA-D-MANNOSE (MANaf)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
3f: ALPHA-D-MANNOSE (MANf)
3g: ALPHA-D-MANNOSE (MANg)
3h: ALPHA-D-MANNOSE (MANh)
3i: ALPHA-D-MANNOSE (MANi)
3j: ALPHA-D-MANNOSE (MANj)
3k: ALPHA-D-MANNOSE (MANk)
3l: ALPHA-D-MANNOSE (MANl)
3m: ALPHA-D-MANNOSE (MANm)
3n: ALPHA-D-MANNOSE (MANn)
3o: ALPHA-D-MANNOSE (MANo)
3p: ALPHA-D-MANNOSE (MANp)
3q: ALPHA-D-MANNOSE (MANq)
3r: ALPHA-D-MANNOSE (MANr)
3s: ALPHA-D-MANNOSE (MANs)
3t: ALPHA-D-MANNOSE (MANt)
3u: ALPHA-D-MANNOSE (MANu)
3v: ALPHA-D-MANNOSE (MANv)
3w: ALPHA-D-MANNOSE (MANw)
3x: ALPHA-D-MANNOSE (MANx)
3y: ALPHA-D-MANNOSE (MANy)
3z: ALPHA-D-MANNOSE (MANz)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
4ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
4ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
4ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
4ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
4af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
4q: N-ACETYL-D-GLUCOSAMINE (NAGq)
4r: N-ACETYL-D-GLUCOSAMINE (NAGr)
4s: N-ACETYL-D-GLUCOSAMINE (NAGs)
4t: N-ACETYL-D-GLUCOSAMINE (NAGt)
4u: N-ACETYL-D-GLUCOSAMINE (NAGu)
4v: N-ACETYL-D-GLUCOSAMINE (NAGv)
4w: N-ACETYL-D-GLUCOSAMINE (NAGw)
4x: N-ACETYL-D-GLUCOSAMINE (NAGx)
4y: N-ACETYL-D-GLUCOSAMINE (NAGy)
4z: N-ACETYL-D-GLUCOSAMINE (NAGz)
5a: PHOSPHATE ION (PO4a)
5b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
4
Ligand/Ion
BETA-D-MANNOSE
2
EDO
7
Ligand/Ion
1,2-ETHANEDIOL
3
MAN
8
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
PO4
-1
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(37, 37)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC9 (SOFTWARE)
22: FC1 (SOFTWARE)
23: FC5 (SOFTWARE)
24: GC2 (SOFTWARE)
25: GC7 (SOFTWARE)
26: GC8 (SOFTWARE)
27: JC1 (SOFTWARE)
28: JC2 (SOFTWARE)
29: JC3 (SOFTWARE)
30: JC6 (SOFTWARE)
31: JC7 (SOFTWARE)
32: JC8 (SOFTWARE)
33: KC1 (SOFTWARE)
34: KC2 (SOFTWARE)
35: KC9 (SOFTWARE)
36: LC1 (SOFTWARE)
37: LC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:12 , TRP A:13 , TRP A:37 , THR A:39 , GLU A:42 , SER A:43 , NAG A:202 , HOH A:845 , ILE C:59 , EDO G:807
BINDING SITE FOR RESIDUE NAG A 201
02
AC2
SOFTWARE
SER A:14 , ASN A:15 , TRP A:37 , THR A:38 , THR A:39 , NAG A:201 , BMA A:203 , HOH A:823 , HOH A:827 , HOH A:875 , ILE C:59
BINDING SITE FOR RESIDUE NAG A 202
03
AC3
SOFTWARE
ASN A:15 , GLN A:36 , TRP A:37 , NAG A:202 , MAN A:204 , MAN A:205 , HOH A:823 , HOH A:891
BINDING SITE FOR RESIDUE BMA A 203
04
AC4
SOFTWARE
THR A:38 , BMA A:203 , EDO A:805
BINDING SITE FOR RESIDUE MAN A 204
05
AC5
SOFTWARE
GLY A:35 , GLN A:36 , BMA A:203 , HOH A:867
BINDING SITE FOR RESIDUE MAN A 205
06
AC6
SOFTWARE
LEU A:71 , TRP A:72 , TRP A:96 , THR A:98 , GLU A:101 , GLY A:102 , NAG A:212
BINDING SITE FOR RESIDUE NAG A 211
07
AC7
SOFTWARE
SER A:73 , ASN A:74 , TRP A:96 , ARG A:97 , THR A:98 , NAG A:211 , BMA A:213 , HOH A:838 , HOH A:849 , HOH A:882
BINDING SITE FOR RESIDUE NAG A 212
08
AC8
SOFTWARE
ASN A:74 , GLN A:95 , TRP A:96 , NAG A:212 , MAN A:214 , MAN A:215 , HOH A:838
BINDING SITE FOR RESIDUE BMA A 213
09
AC9
SOFTWARE
ARG A:97 , BMA A:213 , EDO A:801 , HOH A:881
BINDING SITE FOR RESIDUE MAN A 214
10
BC1
SOFTWARE
GLY A:94 , GLN A:95 , BMA A:213 , HOH A:848
BINDING SITE FOR RESIDUE MAN A 215
11
BC2
SOFTWARE
LEU B:12 , TRP B:13 , TRP B:37 , THR B:39 , GLU B:42 , SER B:43 , NAG B:202
BINDING SITE FOR RESIDUE NAG B 201
12
BC3
SOFTWARE
SER B:14 , ASN B:15 , TRP B:37 , THR B:38 , THR B:39 , NAG B:201 , BMA B:203 , HOH B:860 , HOH B:891
BINDING SITE FOR RESIDUE NAG B 202
13
BC4
SOFTWARE
ASN B:15 , GLN B:36 , TRP B:37 , NAG B:202 , MAN B:204 , MAN B:205 , HOH B:860 , HOH B:874 , HOH B:889
BINDING SITE FOR RESIDUE BMA B 203
14
BC5
SOFTWARE
THR B:38 , BMA B:203
BINDING SITE FOR RESIDUE MAN B 204
15
BC6
SOFTWARE
GLY B:35 , GLN B:36 , BMA B:203 , HOH B:857
BINDING SITE FOR RESIDUE MAN B 205
16
BC7
SOFTWARE
LEU B:71 , TRP B:72 , TRP B:96 , THR B:98 , GLU B:101 , GLY B:102 , SER B:105 , NAG B:212 , ALA E:16
BINDING SITE FOR RESIDUE NAG B 211
17
BC8
SOFTWARE
SER B:73 , ASN B:74 , TRP B:96 , ARG B:97 , THR B:98 , NAG B:211 , BMA B:213 , HOH B:853 , HOH B:871 , HOH B:876
BINDING SITE FOR RESIDUE NAG B 212
18
BC9
SOFTWARE
ASN B:74 , GLN B:95 , TRP B:96 , NAG B:212 , MAN B:214 , MAN B:215 , HOH B:853 , HOH B:867 , HOH E:878
BINDING SITE FOR RESIDUE BMA B 213
19
CC1
SOFTWARE
BMA B:213 , EDO B:824 , NAG E:211
BINDING SITE FOR RESIDUE MAN B 214
20
CC2
SOFTWARE
GLY B:94 , GLN B:95 , BMA B:213 , HOH B:868 , HOH B:894
BINDING SITE FOR RESIDUE MAN B 215
21
CC9
SOFTWARE
ILE B:59 , SER C:73 , ASN C:74 , TRP C:96 , ARG C:97 , THR C:98 , NAG C:211 , BMA C:213 , HOH C:846 , GLU F:55
BINDING SITE FOR RESIDUE NAG C 212
22
FC1
SOFTWARE
MAN B:214 , HOH B:897 , LEU E:71 , TRP E:72 , TRP E:96 , THR E:98 , GLU E:101 , GLY E:102 , NAG E:212 , HOH E:876
BINDING SITE FOR RESIDUE NAG E 211
23
FC5
SOFTWARE
ARG A:97 , PHE B:62 , LYS B:63 , HOH B:848 , ASN E:74 , GLN E:78 , GLY E:94 , GLN E:95 , BMA E:213 , HOH E:850 , HOH E:868 , HOH E:879
BINDING SITE FOR RESIDUE MAN E 215
24
GC2
SOFTWARE
ALA A:16 , LEU F:71 , TRP F:72 , TRP F:96 , THR F:98 , GLU F:101 , GLY F:102 , NAG F:212 , HOH F:854
BINDING SITE FOR RESIDUE NAG F 211
25
GC7
SOFTWARE
HOH A:885 , GLU B:17 , LEU G:12 , TRP G:13 , TRP G:37 , THR G:39 , SER G:43 , NAG G:202 , HOH G:888 , HOH G:890
BINDING SITE FOR RESIDUE NAG G 201
26
GC8
SOFTWARE
TRP B:13 , SER G:14 , ASN G:15 , TRP G:37 , THR G:38 , THR G:39 , NAG G:201 , BMA G:203 , HOH G:846 , HOH G:851 , HOH G:856 , HOH G:871 , HOH G:904
BINDING SITE FOR RESIDUE NAG G 202
27
JC1
SOFTWARE
GLN B:108 , NAG E:212 , BMA E:213 , HOH E:840
BINDING SITE FOR RESIDUE PO4 E 702
28
JC2
SOFTWARE
ASP A:65 , TRP A:96 , ARG A:97 , MAN A:214
BINDING SITE FOR RESIDUE EDO A 801
29
JC3
SOFTWARE
LYS B:63 , THR B:64 , ASP B:65 , GLN B:108 , EDO B:824 , NAG E:212
BINDING SITE FOR RESIDUE EDO E 802
30
JC6
SOFTWARE
ASN A:6 , GLN A:36 , TRP A:37 , THR A:38 , GLU A:49 , MAN A:204
BINDING SITE FOR RESIDUE EDO A 805
31
JC7
SOFTWARE
LYS A:4 , ASN A:6 , GLU A:49 , HOH A:868 , ASN B:6 , HOH B:838
BINDING SITE FOR RESIDUE EDO A 806
32
JC8
SOFTWARE
TRP A:13 , NAG A:201 , ILE C:59 , ALA G:1 , GLN G:53 , VAL G:54 , GLU G:55
BINDING SITE FOR RESIDUE EDO G 807
33
KC1
SOFTWARE
PHE B:33 , THR B:34 , TRP E:72 , GLU E:76 , LYS F:24 , HOH F:871 , HOH F:879
BINDING SITE FOR RESIDUE EDO F 809
34
KC2
SOFTWARE
GLN B:30 , GLY B:31 , ASN B:32 , GLU B:51 , LEU B:52 , GLN B:53 , GLY E:102
BINDING SITE FOR RESIDUE EDO B 810
35
KC9
SOFTWARE
HIS A:29 , SER A:87 , HOH A:818 , HOH A:820
BINDING SITE FOR RESIDUE EDO A 817
36
LC1
SOFTWARE
PRO A:8 , HIS B:29 , SER B:87 , HOH B:833 , HOH B:845
BINDING SITE FOR RESIDUE EDO B 818
37
LC7
SOFTWARE
ASP B:65 , GLN B:95 , TRP B:96 , ARG B:97 , MAN B:214 , EDO E:802
BINDING SITE FOR RESIDUE EDO B 824
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 16)
Info
all PFAM domains
1a: PFAM_MVL_1zhsH01 (H:74-110)
1b: PFAM_MVL_1zhsH02 (H:74-110)
1c: PFAM_MVL_1zhsH03 (H:74-110)
1d: PFAM_MVL_1zhsH04 (H:74-110)
1e: PFAM_MVL_1zhsH05 (H:74-110)
1f: PFAM_MVL_1zhsH06 (H:74-110)
1g: PFAM_MVL_1zhsH07 (H:74-110)
1h: PFAM_MVL_1zhsH08 (H:74-110)
1i: PFAM_MVL_1zhsH09 (H:74-110)
1j: PFAM_MVL_1zhsH10 (H:74-110)
1k: PFAM_MVL_1zhsH11 (H:74-110)
1l: PFAM_MVL_1zhsH12 (H:74-110)
1m: PFAM_MVL_1zhsH13 (H:74-110)
1n: PFAM_MVL_1zhsH14 (H:74-110)
1o: PFAM_MVL_1zhsH15 (H:74-110)
1p: PFAM_MVL_1zhsH16 (H:74-110)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: MVL]
(2)
Family
:
MVL
(2)
Microcystis viridis
(2)
1a
MVL-1zhsH01
H:74-110
1b
MVL-1zhsH02
H:74-110
1c
MVL-1zhsH03
H:74-110
1d
MVL-1zhsH04
H:74-110
1e
MVL-1zhsH05
H:74-110
1f
MVL-1zhsH06
H:74-110
1g
MVL-1zhsH07
H:74-110
1h
MVL-1zhsH08
H:74-110
1i
MVL-1zhsH09
H:74-110
1j
MVL-1zhsH10
H:74-110
1k
MVL-1zhsH11
H:74-110
1l
MVL-1zhsH12
H:74-110
1m
MVL-1zhsH13
H:74-110
1n
MVL-1zhsH14
H:74-110
1o
MVL-1zhsH15
H:74-110
1p
MVL-1zhsH16
H:74-110
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Asym.Unit (188 KB)
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