PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1ZHS
Asym. Unit
Info
Asym.Unit (188 KB)
Biol.Unit 1 (49 KB)
Biol.Unit 2 (49 KB)
Biol.Unit 3 (49 KB)
Biol.Unit 4 (49 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF MVL BOUND TO MAN3GLCNAC2
Authors
:
D. C. Williams, J. Y. Lee, M. Cai, C. A. Bewley, G. M. Clore
Date
:
26 Apr 05 (Deposition) - 07 Jun 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Mvl, Hiv-1, Carbohydrate Binding, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. C. Williams, J. Y. Lee, M. Cai, C. A. Bewley, G. M. Clore
Crystal Structures Of The Hiv-1 Inhibitory Cyanobacterial Protein Mvl Free And Bound To Man3Glcnac2: Structural Basis For Specificity And High-Affinity Binding To The Core Pentasaccharide From N-Linked Oligomannoside.
J. Biol. Chem. V. 280 29269 2005
[
close entry info
]
Hetero Components
(5, 108)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
1h: BETA-D-MANNOSE (BMAh)
1i: BETA-D-MANNOSE (BMAi)
1j: BETA-D-MANNOSE (BMAj)
1k: BETA-D-MANNOSE (BMAk)
1l: BETA-D-MANNOSE (BMAl)
1m: BETA-D-MANNOSE (BMAm)
1n: BETA-D-MANNOSE (BMAn)
1o: BETA-D-MANNOSE (BMAo)
1p: BETA-D-MANNOSE (BMAp)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
2y: 1,2-ETHANEDIOL (EDOy)
2z: 1,2-ETHANEDIOL (EDOz)
3a: ALPHA-D-MANNOSE (MANa)
3aa: ALPHA-D-MANNOSE (MANaa)
3ab: ALPHA-D-MANNOSE (MANab)
3ac: ALPHA-D-MANNOSE (MANac)
3ad: ALPHA-D-MANNOSE (MANad)
3ae: ALPHA-D-MANNOSE (MANae)
3af: ALPHA-D-MANNOSE (MANaf)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
3f: ALPHA-D-MANNOSE (MANf)
3g: ALPHA-D-MANNOSE (MANg)
3h: ALPHA-D-MANNOSE (MANh)
3i: ALPHA-D-MANNOSE (MANi)
3j: ALPHA-D-MANNOSE (MANj)
3k: ALPHA-D-MANNOSE (MANk)
3l: ALPHA-D-MANNOSE (MANl)
3m: ALPHA-D-MANNOSE (MANm)
3n: ALPHA-D-MANNOSE (MANn)
3o: ALPHA-D-MANNOSE (MANo)
3p: ALPHA-D-MANNOSE (MANp)
3q: ALPHA-D-MANNOSE (MANq)
3r: ALPHA-D-MANNOSE (MANr)
3s: ALPHA-D-MANNOSE (MANs)
3t: ALPHA-D-MANNOSE (MANt)
3u: ALPHA-D-MANNOSE (MANu)
3v: ALPHA-D-MANNOSE (MANv)
3w: ALPHA-D-MANNOSE (MANw)
3x: ALPHA-D-MANNOSE (MANx)
3y: ALPHA-D-MANNOSE (MANy)
3z: ALPHA-D-MANNOSE (MANz)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
4ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
4ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
4ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
4ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
4af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
4q: N-ACETYL-D-GLUCOSAMINE (NAGq)
4r: N-ACETYL-D-GLUCOSAMINE (NAGr)
4s: N-ACETYL-D-GLUCOSAMINE (NAGs)
4t: N-ACETYL-D-GLUCOSAMINE (NAGt)
4u: N-ACETYL-D-GLUCOSAMINE (NAGu)
4v: N-ACETYL-D-GLUCOSAMINE (NAGv)
4w: N-ACETYL-D-GLUCOSAMINE (NAGw)
4x: N-ACETYL-D-GLUCOSAMINE (NAGx)
4y: N-ACETYL-D-GLUCOSAMINE (NAGy)
4z: N-ACETYL-D-GLUCOSAMINE (NAGz)
5a: PHOSPHATE ION (PO4a)
5b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
16
Ligand/Ion
BETA-D-MANNOSE
2
EDO
26
Ligand/Ion
1,2-ETHANEDIOL
3
MAN
32
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
32
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
PO4
2
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(108, 108)
Info
All Sites
001: AC1 (SOFTWARE)
002: AC2 (SOFTWARE)
003: AC3 (SOFTWARE)
004: AC4 (SOFTWARE)
005: AC5 (SOFTWARE)
006: AC6 (SOFTWARE)
007: AC7 (SOFTWARE)
008: AC8 (SOFTWARE)
009: AC9 (SOFTWARE)
010: BC1 (SOFTWARE)
011: BC2 (SOFTWARE)
012: BC3 (SOFTWARE)
013: BC4 (SOFTWARE)
014: BC5 (SOFTWARE)
015: BC6 (SOFTWARE)
016: BC7 (SOFTWARE)
017: BC8 (SOFTWARE)
018: BC9 (SOFTWARE)
019: CC1 (SOFTWARE)
020: CC2 (SOFTWARE)
021: CC3 (SOFTWARE)
022: CC4 (SOFTWARE)
023: CC5 (SOFTWARE)
024: CC6 (SOFTWARE)
025: CC7 (SOFTWARE)
026: CC8 (SOFTWARE)
027: CC9 (SOFTWARE)
028: DC1 (SOFTWARE)
029: DC2 (SOFTWARE)
030: DC3 (SOFTWARE)
031: DC4 (SOFTWARE)
032: DC5 (SOFTWARE)
033: DC6 (SOFTWARE)
034: DC7 (SOFTWARE)
035: DC8 (SOFTWARE)
036: DC9 (SOFTWARE)
037: EC1 (SOFTWARE)
038: EC2 (SOFTWARE)
039: EC3 (SOFTWARE)
040: EC4 (SOFTWARE)
041: EC5 (SOFTWARE)
042: EC6 (SOFTWARE)
043: EC7 (SOFTWARE)
044: EC8 (SOFTWARE)
045: EC9 (SOFTWARE)
046: FC1 (SOFTWARE)
047: FC2 (SOFTWARE)
048: FC3 (SOFTWARE)
049: FC4 (SOFTWARE)
050: FC5 (SOFTWARE)
051: FC6 (SOFTWARE)
052: FC7 (SOFTWARE)
053: FC8 (SOFTWARE)
054: FC9 (SOFTWARE)
055: GC1 (SOFTWARE)
056: GC2 (SOFTWARE)
057: GC3 (SOFTWARE)
058: GC4 (SOFTWARE)
059: GC5 (SOFTWARE)
060: GC6 (SOFTWARE)
061: GC7 (SOFTWARE)
062: GC8 (SOFTWARE)
063: GC9 (SOFTWARE)
064: HC1 (SOFTWARE)
065: HC2 (SOFTWARE)
066: HC3 (SOFTWARE)
067: HC4 (SOFTWARE)
068: HC5 (SOFTWARE)
069: HC6 (SOFTWARE)
070: HC7 (SOFTWARE)
071: HC8 (SOFTWARE)
072: HC9 (SOFTWARE)
073: IC1 (SOFTWARE)
074: IC2 (SOFTWARE)
075: IC3 (SOFTWARE)
076: IC4 (SOFTWARE)
077: IC5 (SOFTWARE)
078: IC6 (SOFTWARE)
079: IC7 (SOFTWARE)
080: IC8 (SOFTWARE)
081: IC9 (SOFTWARE)
082: JC1 (SOFTWARE)
083: JC2 (SOFTWARE)
084: JC3 (SOFTWARE)
085: JC4 (SOFTWARE)
086: JC5 (SOFTWARE)
087: JC6 (SOFTWARE)
088: JC7 (SOFTWARE)
089: JC8 (SOFTWARE)
090: JC9 (SOFTWARE)
091: KC1 (SOFTWARE)
092: KC2 (SOFTWARE)
093: KC3 (SOFTWARE)
094: KC4 (SOFTWARE)
095: KC5 (SOFTWARE)
096: KC6 (SOFTWARE)
097: KC7 (SOFTWARE)
098: KC8 (SOFTWARE)
099: KC9 (SOFTWARE)
100: LC1 (SOFTWARE)
101: LC2 (SOFTWARE)
102: LC3 (SOFTWARE)
103: LC4 (SOFTWARE)
104: LC5 (SOFTWARE)
105: LC6 (SOFTWARE)
106: LC7 (SOFTWARE)
107: LC8 (SOFTWARE)
108: LC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
001
AC1
SOFTWARE
LEU A:12 , TRP A:13 , TRP A:37 , THR A:39 , GLU A:42 , SER A:43 , NAG A:202 , HOH A:845 , ILE C:59 , EDO G:807
BINDING SITE FOR RESIDUE NAG A 201
002
AC2
SOFTWARE
SER A:14 , ASN A:15 , TRP A:37 , THR A:38 , THR A:39 , NAG A:201 , BMA A:203 , HOH A:823 , HOH A:827 , HOH A:875 , ILE C:59
BINDING SITE FOR RESIDUE NAG A 202
003
AC3
SOFTWARE
ASN A:15 , GLN A:36 , TRP A:37 , NAG A:202 , MAN A:204 , MAN A:205 , HOH A:823 , HOH A:891
BINDING SITE FOR RESIDUE BMA A 203
004
AC4
SOFTWARE
THR A:38 , BMA A:203 , EDO A:805
BINDING SITE FOR RESIDUE MAN A 204
005
AC5
SOFTWARE
GLY A:35 , GLN A:36 , BMA A:203 , HOH A:867
BINDING SITE FOR RESIDUE MAN A 205
006
AC6
SOFTWARE
LEU A:71 , TRP A:72 , TRP A:96 , THR A:98 , GLU A:101 , GLY A:102 , NAG A:212
BINDING SITE FOR RESIDUE NAG A 211
007
AC7
SOFTWARE
SER A:73 , ASN A:74 , TRP A:96 , ARG A:97 , THR A:98 , NAG A:211 , BMA A:213 , HOH A:838 , HOH A:849 , HOH A:882
BINDING SITE FOR RESIDUE NAG A 212
008
AC8
SOFTWARE
ASN A:74 , GLN A:95 , TRP A:96 , NAG A:212 , MAN A:214 , MAN A:215 , HOH A:838
BINDING SITE FOR RESIDUE BMA A 213
009
AC9
SOFTWARE
ARG A:97 , BMA A:213 , EDO A:801 , HOH A:881
BINDING SITE FOR RESIDUE MAN A 214
010
BC1
SOFTWARE
GLY A:94 , GLN A:95 , BMA A:213 , HOH A:848
BINDING SITE FOR RESIDUE MAN A 215
011
BC2
SOFTWARE
LEU B:12 , TRP B:13 , TRP B:37 , THR B:39 , GLU B:42 , SER B:43 , NAG B:202
BINDING SITE FOR RESIDUE NAG B 201
012
BC3
SOFTWARE
SER B:14 , ASN B:15 , TRP B:37 , THR B:38 , THR B:39 , NAG B:201 , BMA B:203 , HOH B:860 , HOH B:891
BINDING SITE FOR RESIDUE NAG B 202
013
BC4
SOFTWARE
ASN B:15 , GLN B:36 , TRP B:37 , NAG B:202 , MAN B:204 , MAN B:205 , HOH B:860 , HOH B:874 , HOH B:889
BINDING SITE FOR RESIDUE BMA B 203
014
BC5
SOFTWARE
THR B:38 , BMA B:203
BINDING SITE FOR RESIDUE MAN B 204
015
BC6
SOFTWARE
GLY B:35 , GLN B:36 , BMA B:203 , HOH B:857
BINDING SITE FOR RESIDUE MAN B 205
016
BC7
SOFTWARE
LEU B:71 , TRP B:72 , TRP B:96 , THR B:98 , GLU B:101 , GLY B:102 , SER B:105 , NAG B:212 , ALA E:16
BINDING SITE FOR RESIDUE NAG B 211
017
BC8
SOFTWARE
SER B:73 , ASN B:74 , TRP B:96 , ARG B:97 , THR B:98 , NAG B:211 , BMA B:213 , HOH B:853 , HOH B:871 , HOH B:876
BINDING SITE FOR RESIDUE NAG B 212
018
BC9
SOFTWARE
ASN B:74 , GLN B:95 , TRP B:96 , NAG B:212 , MAN B:214 , MAN B:215 , HOH B:853 , HOH B:867 , HOH E:878
BINDING SITE FOR RESIDUE BMA B 213
019
CC1
SOFTWARE
BMA B:213 , EDO B:824 , NAG E:211
BINDING SITE FOR RESIDUE MAN B 214
020
CC2
SOFTWARE
GLY B:94 , GLN B:95 , BMA B:213 , HOH B:868 , HOH B:894
BINDING SITE FOR RESIDUE MAN B 215
021
CC3
SOFTWARE
LEU C:12 , TRP C:13 , TRP C:37 , THR C:39 , SER C:43 , SER C:46 , NAG C:202
BINDING SITE FOR RESIDUE NAG C 201
022
CC4
SOFTWARE
SER C:14 , ASN C:15 , TRP C:37 , THR C:38 , THR C:39 , NAG C:201 , BMA C:203 , HOH C:875
BINDING SITE FOR RESIDUE NAG C 202
023
CC5
SOFTWARE
ASN C:15 , GLN C:36 , TRP C:37 , NAG C:202 , MAN C:204 , MAN C:205
BINDING SITE FOR RESIDUE BMA C 203
024
CC6
SOFTWARE
THR C:38 , BMA C:203
BINDING SITE FOR RESIDUE MAN C 204
025
CC7
SOFTWARE
GLY C:35 , GLN C:36 , BMA C:203
BINDING SITE FOR RESIDUE MAN C 205
026
CC8
SOFTWARE
LEU C:71 , TRP C:72 , TRP C:96 , THR C:98 , GLY C:102 , NAG C:212 , HOH C:837 , HOH F:893 , ALA H:16
BINDING SITE FOR RESIDUE NAG C 211
027
CC9
SOFTWARE
ILE B:59 , SER C:73 , ASN C:74 , TRP C:96 , ARG C:97 , THR C:98 , NAG C:211 , BMA C:213 , HOH C:846 , GLU F:55
BINDING SITE FOR RESIDUE NAG C 212
028
DC1
SOFTWARE
ASN C:74 , GLN C:95 , TRP C:96 , NAG C:212 , MAN C:214 , MAN C:215 , HOH C:846
BINDING SITE FOR RESIDUE BMA C 213
029
DC2
SOFTWARE
BMA C:213 , EDO C:814 , HOH C:852 , HOH C:866 , HOH C:892 , HOH C:903 , PRO E:11
BINDING SITE FOR RESIDUE MAN C 214
030
DC3
SOFTWARE
GLY C:94 , GLN C:95 , BMA C:213 , HOH C:865 , HOH C:886
BINDING SITE FOR RESIDUE MAN C 215
031
DC4
SOFTWARE
LEU D:12 , TRP D:13 , TRP D:37 , THR D:39 , SER D:43 , SER D:46 , NAG D:202 , HOH D:861
BINDING SITE FOR RESIDUE NAG D 201
032
DC5
SOFTWARE
SER D:14 , ASN D:15 , TRP D:37 , THR D:38 , THR D:39 , NAG D:201 , BMA D:203 , HOH D:867 , HOH D:875 , HOH D:885
BINDING SITE FOR RESIDUE NAG D 202
033
DC6
SOFTWARE
ASN D:15 , GLN D:36 , TRP D:37 , NAG D:202 , MAN D:204 , MAN D:205 , HOH D:867
BINDING SITE FOR RESIDUE BMA D 203
034
DC7
SOFTWARE
THR D:38 , BMA D:203 , EDO D:816
BINDING SITE FOR RESIDUE MAN D 204
035
DC8
SOFTWARE
GLY D:35 , GLN D:36 , BMA D:203
BINDING SITE FOR RESIDUE MAN D 205
036
DC9
SOFTWARE
LEU D:71 , TRP D:72 , TRP D:96 , THR D:98 , GLU D:101 , GLY D:102 , NAG D:212 , MAN G:214 , EDO G:812
BINDING SITE FOR RESIDUE NAG D 211
037
EC1
SOFTWARE
SER D:73 , ASN D:74 , TRP D:96 , ARG D:97 , THR D:98 , NAG D:211 , BMA D:213 , HOH D:822 , HOH D:837 , HOH D:850 , HOH D:884 , PO4 G:701 , EDO G:812
BINDING SITE FOR RESIDUE NAG D 212
038
EC2
SOFTWARE
ASN D:74 , GLY D:94 , GLN D:95 , TRP D:96 , NAG D:212 , MAN D:214 , MAN D:215 , HOH D:837 , PO4 G:701 , HOH G:870
BINDING SITE FOR RESIDUE BMA D 213
039
EC3
SOFTWARE
ARG D:97 , BMA D:213 , EDO D:815
BINDING SITE FOR RESIDUE MAN D 214
040
EC4
SOFTWARE
ASN D:74 , GLN D:78 , GLY D:94 , GLN D:95 , BMA D:213 , HOH D:880 , HOH D:892 , PHE G:62 , LYS G:63
BINDING SITE FOR RESIDUE MAN D 215
041
EC5
SOFTWARE
LEU E:12 , TRP E:13 , TRP E:37 , THR E:39 , GLU E:42 , SER E:43 , NAG E:202
BINDING SITE FOR RESIDUE NAG E 201
042
EC6
SOFTWARE
SER E:14 , ASN E:15 , TRP E:37 , THR E:38 , THR E:39 , NAG E:201 , BMA E:203 , HOH E:877 , HOH E:881
BINDING SITE FOR RESIDUE NAG E 202
043
EC7
SOFTWARE
ASN E:15 , GLY E:35 , GLN E:36 , TRP E:37 , NAG E:202 , MAN E:204 , MAN E:205
BINDING SITE FOR RESIDUE BMA E 203
044
EC8
SOFTWARE
THR E:38 , BMA E:203
BINDING SITE FOR RESIDUE MAN E 204
045
EC9
SOFTWARE
GLY E:35 , GLN E:36 , BMA E:203
BINDING SITE FOR RESIDUE MAN E 205
046
FC1
SOFTWARE
MAN B:214 , HOH B:897 , LEU E:71 , TRP E:72 , TRP E:96 , THR E:98 , GLU E:101 , GLY E:102 , NAG E:212 , HOH E:876
BINDING SITE FOR RESIDUE NAG E 211
047
FC2
SOFTWARE
SER E:73 , ASN E:74 , TRP E:96 , ARG E:97 , THR E:98 , NAG E:211 , BMA E:213 , PO4 E:702 , EDO E:802 , HOH E:840 , HOH E:856 , HOH E:866
BINDING SITE FOR RESIDUE NAG E 212
048
FC3
SOFTWARE
ASN E:74 , GLN E:95 , TRP E:96 , NAG E:212 , MAN E:214 , MAN E:215 , PO4 E:702 , HOH E:840 , HOH E:869
BINDING SITE FOR RESIDUE BMA E 213
049
FC4
SOFTWARE
ARG E:97 , BMA E:213 , EDO E:803
BINDING SITE FOR RESIDUE MAN E 214
050
FC5
SOFTWARE
ARG A:97 , PHE B:62 , LYS B:63 , HOH B:848 , ASN E:74 , GLN E:78 , GLY E:94 , GLN E:95 , BMA E:213 , HOH E:850 , HOH E:868 , HOH E:879
BINDING SITE FOR RESIDUE MAN E 215
051
FC6
SOFTWARE
LEU F:12 , TRP F:13 , TRP F:37 , THR F:39 , SER F:43 , NAG F:202
BINDING SITE FOR RESIDUE NAG F 201
052
FC7
SOFTWARE
SER F:14 , ASN F:15 , TRP F:37 , THR F:38 , THR F:39 , NAG F:201 , BMA F:203
BINDING SITE FOR RESIDUE NAG F 202
053
FC8
SOFTWARE
ASN F:15 , GLN F:36 , TRP F:37 , NAG F:202 , MAN F:204 , MAN F:205
BINDING SITE FOR RESIDUE BMA F 203
054
FC9
SOFTWARE
THR F:38 , BMA F:203
BINDING SITE FOR RESIDUE MAN F 204
055
GC1
SOFTWARE
ASN F:15 , GLY F:35 , GLN F:36 , BMA F:203 , HOH F:891
BINDING SITE FOR RESIDUE MAN F 205
056
GC2
SOFTWARE
ALA A:16 , LEU F:71 , TRP F:72 , TRP F:96 , THR F:98 , GLU F:101 , GLY F:102 , NAG F:212 , HOH F:854
BINDING SITE FOR RESIDUE NAG F 211
057
GC3
SOFTWARE
GLU C:55 , SER F:73 , ASN F:74 , TRP F:96 , ARG F:97 , THR F:98 , NAG F:211 , BMA F:213 , HOH F:847
BINDING SITE FOR RESIDUE NAG F 212
058
GC4
SOFTWARE
ASN F:74 , GLY F:94 , GLN F:95 , TRP F:96 , NAG F:212 , MAN F:214 , MAN F:215 , HOH F:847 , HOH F:880 , HOH F:884
BINDING SITE FOR RESIDUE BMA F 213
059
GC5
SOFTWARE
BMA F:213 , EDO F:804 , HOH F:904
BINDING SITE FOR RESIDUE MAN F 214
060
GC6
SOFTWARE
GLY F:94 , GLN F:95 , BMA F:213 , HOH F:881 , HOH F:889 , HOH F:898
BINDING SITE FOR RESIDUE MAN F 215
061
GC7
SOFTWARE
HOH A:885 , GLU B:17 , LEU G:12 , TRP G:13 , TRP G:37 , THR G:39 , SER G:43 , NAG G:202 , HOH G:888 , HOH G:890
BINDING SITE FOR RESIDUE NAG G 201
062
GC8
SOFTWARE
TRP B:13 , SER G:14 , ASN G:15 , TRP G:37 , THR G:38 , THR G:39 , NAG G:201 , BMA G:203 , HOH G:846 , HOH G:851 , HOH G:856 , HOH G:871 , HOH G:904
BINDING SITE FOR RESIDUE NAG G 202
063
GC9
SOFTWARE
ASN G:15 , GLY G:35 , GLN G:36 , TRP G:37 , NAG G:202 , MAN G:204 , MAN G:205 , HOH G:846 , HOH G:872
BINDING SITE FOR RESIDUE BMA G 203
064
HC1
SOFTWARE
THR G:38 , BMA G:203
BINDING SITE FOR RESIDUE MAN G 204
065
HC2
SOFTWARE
GLN G:36 , BMA G:203 , HOH G:899
BINDING SITE FOR RESIDUE MAN G 205
066
HC3
SOFTWARE
ALA D:16 , LEU G:71 , TRP G:72 , TRP G:96 , THR G:98 , GLU G:101 , GLY G:102 , NAG G:212
BINDING SITE FOR RESIDUE NAG G 211
067
HC4
SOFTWARE
SER G:73 , ASN G:74 , TRP G:96 , ARG G:97 , THR G:98 , NAG G:211 , BMA G:213 , HOH G:850 , HOH G:864 , HOH G:874
BINDING SITE FOR RESIDUE NAG G 212
068
HC5
SOFTWARE
ASN G:74 , GLN G:95 , TRP G:96 , NAG G:212 , MAN G:214 , MAN G:215 , HOH G:850 , HOH G:885 , HOH G:898
BINDING SITE FOR RESIDUE BMA G 213
069
HC6
SOFTWARE
NAG D:211 , BMA G:213 , EDO G:812 , EDO G:826
BINDING SITE FOR RESIDUE MAN G 214
070
HC7
SOFTWARE
GLY G:94 , GLN G:95 , BMA G:213 , HOH G:855 , HOH G:889
BINDING SITE FOR RESIDUE MAN G 215
071
HC8
SOFTWARE
ILE F:59 , LEU H:12 , TRP H:13 , TRP H:37 , THR H:39 , GLU H:42 , SER H:43 , NAG H:202 , HOH H:843
BINDING SITE FOR RESIDUE NAG H 201
072
HC9
SOFTWARE
ILE F:59 , SER H:14 , ASN H:15 , TRP H:37 , THR H:38 , THR H:39 , NAG H:201 , BMA H:203 , HOH H:841 , HOH H:844 , HOH H:867
BINDING SITE FOR RESIDUE NAG H 202
073
IC1
SOFTWARE
ASN H:15 , GLY H:35 , GLN H:36 , TRP H:37 , NAG H:202 , MAN H:204 , MAN H:205 , HOH H:844 , HOH H:893 , HOH H:895
BINDING SITE FOR RESIDUE BMA H 203
074
IC2
SOFTWARE
THR H:38 , BMA H:203
BINDING SITE FOR RESIDUE MAN H 204
075
IC3
SOFTWARE
HOH C:836 , GLY H:35 , GLN H:36 , BMA H:203
BINDING SITE FOR RESIDUE MAN H 205
076
IC4
SOFTWARE
LEU H:71 , TRP H:72 , TRP H:96 , THR H:98 , GLU H:101 , GLY H:102 , NAG H:212
BINDING SITE FOR RESIDUE NAG H 211
077
IC5
SOFTWARE
SER H:73 , ASN H:74 , TRP H:96 , ARG H:97 , THR H:98 , NAG H:211 , BMA H:213
BINDING SITE FOR RESIDUE NAG H 212
078
IC6
SOFTWARE
ASN H:74 , GLN H:95 , TRP H:96 , NAG H:212 , MAN H:214 , MAN H:215
BINDING SITE FOR RESIDUE BMA H 213
079
IC7
SOFTWARE
ARG H:97 , BMA H:213
BINDING SITE FOR RESIDUE MAN H 214
080
IC8
SOFTWARE
ASN H:74 , GLN H:78 , GLY H:94 , GLN H:95 , BMA H:213
BINDING SITE FOR RESIDUE MAN H 215
081
IC9
SOFTWARE
NAG D:212 , BMA D:213 , HOH D:837 , GLN G:108 , EDO G:812
BINDING SITE FOR RESIDUE PO4 G 701
082
JC1
SOFTWARE
GLN B:108 , NAG E:212 , BMA E:213 , HOH E:840
BINDING SITE FOR RESIDUE PO4 E 702
083
JC2
SOFTWARE
ASP A:65 , TRP A:96 , ARG A:97 , MAN A:214
BINDING SITE FOR RESIDUE EDO A 801
084
JC3
SOFTWARE
LYS B:63 , THR B:64 , ASP B:65 , GLN B:108 , EDO B:824 , NAG E:212
BINDING SITE FOR RESIDUE EDO E 802
085
JC4
SOFTWARE
ASP E:65 , GLN E:95 , TRP E:96 , ARG E:97 , MAN E:214
BINDING SITE FOR RESIDUE EDO E 803
086
JC5
SOFTWARE
ASP F:65 , TRP F:96 , ARG F:97 , MAN F:214
BINDING SITE FOR RESIDUE EDO F 804
087
JC6
SOFTWARE
ASN A:6 , GLN A:36 , TRP A:37 , THR A:38 , GLU A:49 , MAN A:204
BINDING SITE FOR RESIDUE EDO A 805
088
JC7
SOFTWARE
LYS A:4 , ASN A:6 , GLU A:49 , HOH A:868 , ASN B:6 , HOH B:838
BINDING SITE FOR RESIDUE EDO A 806
089
JC8
SOFTWARE
TRP A:13 , NAG A:201 , ILE C:59 , ALA G:1 , GLN G:53 , VAL G:54 , GLU G:55
BINDING SITE FOR RESIDUE EDO G 807
090
JC9
SOFTWARE
VAL G:54 , GLU G:55 , ASN G:56 , GLY G:89 , ALA G:90 , HOH G:869
BINDING SITE FOR RESIDUE EDO G 808
091
KC1
SOFTWARE
PHE B:33 , THR B:34 , TRP E:72 , GLU E:76 , LYS F:24 , HOH F:871 , HOH F:879
BINDING SITE FOR RESIDUE EDO F 809
092
KC2
SOFTWARE
GLN B:30 , GLY B:31 , ASN B:32 , GLU B:51 , LEU B:52 , GLN B:53 , GLY E:102
BINDING SITE FOR RESIDUE EDO B 810
093
KC3
SOFTWARE
HIS G:29 , SER G:87 , TYR G:88 , HOH G:830 , HOH G:833
BINDING SITE FOR RESIDUE EDO G 811
094
KC4
SOFTWARE
NAG D:211 , NAG D:212 , GLN G:95 , GLN G:108 , MAN G:214 , PO4 G:701 , EDO G:826
BINDING SITE FOR RESIDUE EDO G 812
095
KC5
SOFTWARE
GLY D:102 , GLN G:30 , ASN G:32 , GLU G:51 , LEU G:52 , GLN G:53
BINDING SITE FOR RESIDUE EDO G 813
096
KC6
SOFTWARE
ASP C:65 , TRP C:96 , ARG C:97 , GLN C:108 , MAN C:214
BINDING SITE FOR RESIDUE EDO C 814
097
KC7
SOFTWARE
ASP D:65 , GLN D:95 , TRP D:96 , ARG D:97 , MAN D:214
BINDING SITE FOR RESIDUE EDO D 815
098
KC8
SOFTWARE
ASN D:6 , GLN D:36 , TRP D:37 , THR D:38 , GLU D:49 , MAN D:204 , HOH D:890
BINDING SITE FOR RESIDUE EDO D 816
099
KC9
SOFTWARE
HIS A:29 , SER A:87 , HOH A:818 , HOH A:820
BINDING SITE FOR RESIDUE EDO A 817
100
LC1
SOFTWARE
PRO A:8 , HIS B:29 , SER B:87 , HOH B:833 , HOH B:845
BINDING SITE FOR RESIDUE EDO B 818
101
LC2
SOFTWARE
HIS C:29 , LEU C:52 , SER C:87 , TYR C:88 , HOH C:826 , HOH C:827
BINDING SITE FOR RESIDUE EDO C 819
102
LC3
SOFTWARE
HIS D:29 , SER D:87 , TYR D:88 , HOH D:830 , HOH D:834
BINDING SITE FOR RESIDUE EDO D 820
103
LC4
SOFTWARE
HIS E:29 , SER E:87 , TYR E:88 , HOH E:826 , HOH E:830 , HOH E:874
BINDING SITE FOR RESIDUE EDO E 821
104
LC5
SOFTWARE
HIS F:29 , SER F:87 , TYR F:88 , HOH F:825 , HOH F:833
BINDING SITE FOR RESIDUE EDO F 822
105
LC6
SOFTWARE
HIS H:29 , SER H:87 , TYR H:88 , HOH H:828 , HOH H:829
BINDING SITE FOR RESIDUE EDO H 823
106
LC7
SOFTWARE
ASP B:65 , GLN B:95 , TRP B:96 , ARG B:97 , MAN B:214 , EDO E:802
BINDING SITE FOR RESIDUE EDO B 824
107
LC8
SOFTWARE
ASP H:65 , GLN H:95 , TRP H:96 , ARG H:97
BINDING SITE FOR RESIDUE EDO H 825
108
LC9
SOFTWARE
ASP G:65 , GLN G:95 , TRP G:96 , ARG G:97 , MAN G:214 , EDO G:812
BINDING SITE FOR RESIDUE EDO G 826
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 16)
Info
all PFAM domains
1a: PFAM_MVL_1zhsH01 (H:74-110)
1b: PFAM_MVL_1zhsH02 (H:74-110)
1c: PFAM_MVL_1zhsH03 (H:74-110)
1d: PFAM_MVL_1zhsH04 (H:74-110)
1e: PFAM_MVL_1zhsH05 (H:74-110)
1f: PFAM_MVL_1zhsH06 (H:74-110)
1g: PFAM_MVL_1zhsH07 (H:74-110)
1h: PFAM_MVL_1zhsH08 (H:74-110)
1i: PFAM_MVL_1zhsH09 (H:74-110)
1j: PFAM_MVL_1zhsH10 (H:74-110)
1k: PFAM_MVL_1zhsH11 (H:74-110)
1l: PFAM_MVL_1zhsH12 (H:74-110)
1m: PFAM_MVL_1zhsH13 (H:74-110)
1n: PFAM_MVL_1zhsH14 (H:74-110)
1o: PFAM_MVL_1zhsH15 (H:74-110)
1p: PFAM_MVL_1zhsH16 (H:74-110)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: MVL]
(2)
Family
:
MVL
(2)
Microcystis viridis
(2)
1a
MVL-1zhsH01
H:74-110
1b
MVL-1zhsH02
H:74-110
1c
MVL-1zhsH03
H:74-110
1d
MVL-1zhsH04
H:74-110
1e
MVL-1zhsH05
H:74-110
1f
MVL-1zhsH06
H:74-110
1g
MVL-1zhsH07
H:74-110
1h
MVL-1zhsH08
H:74-110
1i
MVL-1zhsH09
H:74-110
1j
MVL-1zhsH10
H:74-110
1k
MVL-1zhsH11
H:74-110
1l
MVL-1zhsH12
H:74-110
1m
MVL-1zhsH13
H:74-110
1n
MVL-1zhsH14
H:74-110
1o
MVL-1zhsH15
H:74-110
1p
MVL-1zhsH16
H:74-110
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (188 KB)
Header - Asym.Unit
Biol.Unit 1 (49 KB)
Header - Biol.Unit 1
Biol.Unit 2 (49 KB)
Header - Biol.Unit 2
Biol.Unit 3 (49 KB)
Header - Biol.Unit 3
Biol.Unit 4 (49 KB)
Header - Biol.Unit 4
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1ZHS
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help