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1ZHQ
Asym. Unit
Info
Asym.Unit (162 KB)
Biol.Unit 1 (43 KB)
Biol.Unit 2 (42 KB)
Biol.Unit 3 (42 KB)
Biol.Unit 4 (41 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF APO MVL
Authors
:
D. C. Williams, J. Y. Lee, M. Cai, C. A. Bewley, G. M. Clore
Date
:
26 Apr 05 (Deposition) - 07 Jun 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Hiv-1, Mvl, Cyanobacteria, Carbohydrate Binding, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. C. Williams, J. Y. Lee, M. Cai, C. A. Bewley, G. M. Clore
Crystal Structures Of The Hiv-1 Inhibitory Cyanobacterial Protein Mvl Free And Bound To Man3Glcnac2: Structural Basis For Specificity And High-Affinity Binding To The Core Pentasaccharide From N-Linked Oligomannoside.
J. Biol. Chem. V. 280 29269 2005
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 19)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
2c: PHOSPHATE ION (PO4c)
2d: PHOSPHATE ION (PO4d)
2e: PHOSPHATE ION (PO4e)
2f: PHOSPHATE ION (PO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
13
Ligand/Ion
1,2-ETHANEDIOL
2
PO4
6
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:63 , LYS A:110 , HOH A:1060
BINDING SITE FOR RESIDUE PO4 A 901
02
AC2
SOFTWARE
HOH A:1041 , GLU B:76 , LYS B:79 , LEU B:80 , HOH B:1116
BINDING SITE FOR RESIDUE PO4 B 902
03
AC3
SOFTWARE
GLU B:61 , HOH B:1065
BINDING SITE FOR RESIDUE PO4 B 903
04
AC4
SOFTWARE
LYS B:63 , LYS B:110 , HOH B:1103 , LYS E:4
BINDING SITE FOR RESIDUE PO4 B 904
05
AC5
SOFTWARE
GLU D:91 , LYS D:110
BINDING SITE FOR RESIDUE PO4 D 905
06
AC6
SOFTWARE
ASP F:65 , ARG F:97 , GLN F:108 , TRP H:37 , THR H:38 , HOH H:1016 , HOH H:1021 , HOH H:1093
BINDING SITE FOR RESIDUE PO4 F 906
07
AC7
SOFTWARE
GLU E:55 , ASN E:56 , GLY E:89 , ALA E:90 , HOH E:1047 , HOH E:1057
BINDING SITE FOR RESIDUE EDO E 1001
08
AC8
SOFTWARE
HIS F:29 , SER F:87 , TYR F:88 , HOH F:1015 , HOH F:1018
BINDING SITE FOR RESIDUE EDO F 1002
09
AC9
SOFTWARE
HIS E:29 , SER E:87 , TYR E:88 , HOH E:1005 , HOH E:1012
BINDING SITE FOR RESIDUE EDO E 1003
10
BC1
SOFTWARE
HIS A:29 , SER A:87 , TYR A:88 , HOH A:1013 , HOH A:1025
BINDING SITE FOR RESIDUE EDO A 1004
11
BC2
SOFTWARE
PRO A:8 , HIS B:29 , SER B:87 , HOH B:1015 , HOH B:1028
BINDING SITE FOR RESIDUE EDO B 1005
12
BC3
SOFTWARE
HIS C:29 , SER C:87 , TYR C:88 , HOH C:1010 , HOH C:1015
BINDING SITE FOR RESIDUE EDO C 1006
13
BC4
SOFTWARE
PRO C:8 , HIS D:29 , LEU D:52 , SER D:87 , TYR D:88 , HOH D:1021 , HOH D:1025
BINDING SITE FOR RESIDUE EDO D 1007
14
BC5
SOFTWARE
VAL F:54 , GLU F:55 , ASN F:56 , GLY F:89 , ALA F:90 , HOH F:1017
BINDING SITE FOR RESIDUE EDO F 1008
15
BC6
SOFTWARE
ASP B:65 , TRP B:96 , ARG B:97 , GLN E:36 , TRP E:37
BINDING SITE FOR RESIDUE EDO B 1009
16
BC7
SOFTWARE
HIS G:29 , LEU G:52 , SER G:87 , HOH G:1014 , HOH G:1021 , HOH G:1099
BINDING SITE FOR RESIDUE EDO G 1010
17
BC8
SOFTWARE
LEU G:67 , TYR G:88 , ALA H:28 , HIS H:29 , GLN H:30 , TYR H:88 , TYR H:111 , HOH H:1018 , HOH H:1019
BINDING SITE FOR RESIDUE EDO H 1011
18
BC9
SOFTWARE
ARG B:97 , HOH B:1109 , ASN E:15
BINDING SITE FOR RESIDUE EDO B 1012
19
CC1
SOFTWARE
PRO B:70 , LEU B:71 , GLU B:101 , GLY B:102
BINDING SITE FOR RESIDUE EDO B 1013
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
[
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Pfam Domains
(1, 16)
Info
all PFAM domains
1a: PFAM_MVL_1zhqH01 (H:74-110)
1b: PFAM_MVL_1zhqH02 (H:74-110)
1c: PFAM_MVL_1zhqH03 (H:74-110)
1d: PFAM_MVL_1zhqH04 (H:74-110)
1e: PFAM_MVL_1zhqH05 (H:74-110)
1f: PFAM_MVL_1zhqH06 (H:74-110)
1g: PFAM_MVL_1zhqH07 (H:74-110)
1h: PFAM_MVL_1zhqH08 (H:74-110)
1i: PFAM_MVL_1zhqH09 (H:74-110)
1j: PFAM_MVL_1zhqH10 (H:74-110)
1k: PFAM_MVL_1zhqH11 (H:74-110)
1l: PFAM_MVL_1zhqH12 (H:74-110)
1m: PFAM_MVL_1zhqH13 (H:74-110)
1n: PFAM_MVL_1zhqH14 (H:74-110)
1o: PFAM_MVL_1zhqH15 (H:74-110)
1p: PFAM_MVL_1zhqH16 (H:74-110)
View:
Select:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: MVL]
(2)
Family
:
MVL
(2)
Microcystis viridis
(2)
1a
MVL-1zhqH01
H:74-110
1b
MVL-1zhqH02
H:74-110
1c
MVL-1zhqH03
H:74-110
1d
MVL-1zhqH04
H:74-110
1e
MVL-1zhqH05
H:74-110
1f
MVL-1zhqH06
H:74-110
1g
MVL-1zhqH07
H:74-110
1h
MVL-1zhqH08
H:74-110
1i
MVL-1zhqH09
H:74-110
1j
MVL-1zhqH10
H:74-110
1k
MVL-1zhqH11
H:74-110
1l
MVL-1zhqH12
H:74-110
1m
MVL-1zhqH13
H:74-110
1n
MVL-1zhqH14
H:74-110
1o
MVL-1zhqH15
H:74-110
1p
MVL-1zhqH16
H:74-110
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]
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Asymmetric Unit 1
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Asym.Unit (162 KB)
Header - Asym.Unit
Biol.Unit 1 (43 KB)
Header - Biol.Unit 1
Biol.Unit 2 (42 KB)
Header - Biol.Unit 2
Biol.Unit 3 (42 KB)
Header - Biol.Unit 3
Biol.Unit 4 (41 KB)
Header - Biol.Unit 4
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