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1ZGR
Asym. Unit
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Asym.Unit (144 KB)
Biol.Unit 1 (139 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PARKIA PLATYCEPHALA SEED LECTIN
Authors
:
F. Gallego Del Sol, B. S. Cavada, J. J. Calvete
Date
:
22 Apr 05 (Deposition) - 11 Oct 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Beta-Prism, Lectin, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Gallego Del Sol, C. Nagano, B. S. Cavada, J. J. Calvete
The First Crystal Structure Of A Mimosoideae Lectin Reveals A Novel Quaternary Arrangement Of A Widespread Domain.
J. Mol. Biol. V. 353 574 2005
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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Sorry, no Info available
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_LEC_PARPC_001 (I70V, chain A/B, )
2: VAR_LEC_PARPC_002 (K227R, chain A/B, )
3: VAR_LEC_PARPC_003 (D296N, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_LEC_PARPC_001
*
I
70
V
LEC_PARPC
---
---
A/B
I
70
V
2
UniProt
VAR_LEC_PARPC_002
*
K
227
R
LEC_PARPC
---
---
A/B
K
227
R
3
UniProt
VAR_LEC_PARPC_003
*
D
296
N
LEC_PARPC
---
---
A/B
D
296
N
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: JACALIN_LECTIN (A:5-148,B:5-148|A:153-294,B:153-29...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
JACALIN_LECTIN
PS51752
Jacalin-type lectin domain profile.
LEC_PARPC
5-148
153-294
300-443
6
A:5-148
B:5-148
A:153-294
B:153-294
A:300-443
B:300-443
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Exons
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SCOP Domains
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1zgrA01 (A:4-149)
1b: CATH_1zgrB01 (B:4-149)
1c: CATH_1zgrA02 (A:150-295)
1d: CATH_1zgrB02 (B:150-295)
1e: CATH_1zgrA03 (A:296-444)
1f: CATH_1zgrB03 (B:296-444)
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Class
:
Mainly Beta
(13760)
Architecture
:
Aligned Prism
(39)
Topology
:
Vitelline Membrane Outer Layer Protein I, subunit A
(39)
Homologous Superfamily
:
[code=2.100.10.30, no name defined]
(33)
Parkia platycephala. Organism_taxid: 185447.
(2)
1a
1zgrA01
A:4-149
1b
1zgrB01
B:4-149
1c
1zgrA02
A:150-295
1d
1zgrB02
B:150-295
1e
1zgrA03
A:296-444
1f
1zgrB03
B:296-444
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Jacalin_1zgrB01 (B:311-443)
1b: PFAM_Jacalin_1zgrB02 (B:311-443)
1c: PFAM_Jacalin_1zgrB03 (B:311-443)
1d: PFAM_Jacalin_1zgrB04 (B:311-443)
1e: PFAM_Jacalin_1zgrB05 (B:311-443)
1f: PFAM_Jacalin_1zgrB06 (B:311-443)
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Clan
:
no clan defined [family: Jacalin]
(35)
Family
:
Jacalin
(35)
Parkia platycephala
(2)
1a
Jacalin-1zgrB01
B:311-443
1b
Jacalin-1zgrB02
B:311-443
1c
Jacalin-1zgrB03
B:311-443
1d
Jacalin-1zgrB04
B:311-443
1e
Jacalin-1zgrB05
B:311-443
1f
Jacalin-1zgrB06
B:311-443
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