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1ZG5
Asym. Unit
Info
Asym.Unit (91 KB)
Biol.Unit 1 (44 KB)
Biol.Unit 2 (44 KB)
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(1)
Title
:
NARL COMPLEXED TO NARG-89 PROMOTER PALINDROMIC TAIL-TO-TAIL DNA SITE
Authors
:
A. E. Maris, M. Kaczor-Grzeskowiak, Z. Ma, M. L. Kopka, R. P. Gunsalus, R. E. Dickerson
Date
:
20 Apr 05 (Deposition) - 22 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Protein-Dna Complex, Helix-Turn-Helix, Two-Component Response Regulator, Dna Bending, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. E. Maris, M. Kaczor-Grzeskowiak, Z. Ma, M. L. Kopka, R. P. Gunsalus, R. E. Dickerson
Primary And Secondary Modes Of Dna Recognition By The Narl Two-Component Response Regulator.
Biochemistry V. 44 14538 2005
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 24)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
12
Mod. Amino Acid
SELENOMETHIONINE
2
SO4
12
Ligand/Ion
SULFATE ION
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG F:161 , HOH F:342
BINDING SITE FOR RESIDUE SO4 F 301
02
AC2
SOFTWARE
ARG A:161
BINDING SITE FOR RESIDUE SO4 A 302
03
AC3
SOFTWARE
PRO B:158 , ARG B:161 , HOH B:329
BINDING SITE FOR RESIDUE SO4 B 303
04
AC4
SOFTWARE
SER F:185 , LYS F:188 , HOH F:325 , HOH F:326 , DC G:5 , DC G:6 , HOH H:50 , HOH H:52
BINDING SITE FOR RESIDUE SO4 F 304
05
AC5
SOFTWARE
SER A:185 , LYS A:188 , HOH A:312 , HOH C:27 , HOH C:52 , DC D:25 , DC D:26
BINDING SITE FOR RESIDUE SO4 A 305
06
AC6
SOFTWARE
SER B:185 , LYS B:188 , HOH B:325 , HOH B:334 , HOH B:341 , DC C:6 , HOH D:53 , HOH D:63
BINDING SITE FOR RESIDUE SO4 B 306
07
AC7
SOFTWARE
SER E:185 , LYS E:188 , HOH E:323 , HOH E:324 , HOH G:30 , HOH G:51 , DC H:25 , DC H:26
BINDING SITE FOR RESIDUE SO4 E 307
08
AC8
SOFTWARE
PRO E:158 , ARG E:161
BINDING SITE FOR RESIDUE SO4 E 308
09
AC9
SOFTWARE
ARG A:178
BINDING SITE FOR RESIDUE SO4 A 309
10
BC1
SOFTWARE
ARG B:178
BINDING SITE FOR RESIDUE SO4 B 310
11
BC2
SOFTWARE
ARG E:178
BINDING SITE FOR RESIDUE SO4 E 311
12
BC3
SOFTWARE
ARG F:178
BINDING SITE FOR RESIDUE SO4 F 312
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: HTH_LUXR_1 (A:170-197,B:170-197,E:170-197,F:17...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HTH_LUXR_1
PS00622
LuxR-type HTH domain signature.
NARL_ECOLI
170-197
4
A:170-197
B:170-197
E:170-197
F:170-197
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1zg5a1 (A:151-216)
1b: SCOP_d1zg5f1 (F:151-216)
1c: SCOP_d1zg5b1 (B:151-216)
1d: SCOP_d1zg5e1 (E:151-216)
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Classes
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)
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)
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)
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)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
C-terminal effector domain of the bipartite response regulators
(45)
Family
:
GerE-like (LuxR/UhpA family of transcriptional regulators)
(11)
Protein domain
:
Nitrate/nitrite response regulator (NarL)
(5)
Escherichia coli [TaxId: 562]
(5)
1a
d1zg5a1
A:151-216
1b
d1zg5f1
F:151-216
1c
d1zg5b1
B:151-216
1d
d1zg5e1
E:151-216
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1zg5E00 (E:150-216)
1b: CATH_1zg5A00 (A:151-216)
1c: CATH_1zg5B00 (B:151-216)
1d: CATH_1zg5F00 (F:151-216)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
[unclassified]
(77)
1a
1zg5E00
E:150-216
1b
1zg5A00
A:151-216
1c
1zg5B00
B:151-216
1d
1zg5F00
F:151-216
[
close CATH info
]
Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_GerE_1zg5F01 (F:153-210)
1b: PFAM_GerE_1zg5F02 (F:153-210)
1c: PFAM_GerE_1zg5F03 (F:153-210)
1d: PFAM_GerE_1zg5F04 (F:153-210)
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Clans
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)
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)
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(
)
Organisms
(
)
(
)
Clan
:
HTH
(544)
Family
:
GerE
(15)
Escherichia coli (strain K12)
(2)
1a
GerE-1zg5F01
F:153-210
1b
GerE-1zg5F02
F:153-210
1c
GerE-1zg5F03
F:153-210
1d
GerE-1zg5F04
F:153-210
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (91 KB)
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Header - Biol.Unit 1
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