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1ZE1
Biol. Unit 2
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Asym.Unit (204 KB)
Biol.Unit 1 (54 KB)
Biol.Unit 2 (53 KB)
Biol.Unit 3 (54 KB)
Biol.Unit 4 (50 KB)
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(1)
Title
:
CONFORMATIONAL CHANGE OF PSEUDOURIDINE 55 SYNTHASE UPON ITS ASSOCIATION WITH RNA SUBSTRATE
Authors
:
K. Phannachet, R. H. Huang
Date
:
16 Apr 05 (Deposition) - 26 Apr 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Rna Modification Enzyme, Lyase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
K. Phannachet, R. H. Huang
Conformational Change Of Pseudouridine 55 Synthase Upon Its Association With Rna Substrate
Nucleic Acids Res. V. 32 1422 2004
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
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Sites
(1, 1)
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All Sites
1: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
HIS B:17 , HIS B:34 , HOH B:316
BINDING SITE FOR RESIDUE MG B 310
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 1)
Info
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1: PUA (B:229-306)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PUA
PS50890
PUA domain profile.
TRUB_THEMA
229-306
1
-
B:229-306
-
-
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1ze1a1 (A:229-308)
1b: SCOP_d1ze1b1 (B:229-308)
1c: SCOP_d1ze1c1 (C:229-308)
1d: SCOP_d1ze1d1 (D:229-308)
2a: SCOP_d1ze1a2 (A:1-228)
2b: SCOP_d1ze1b2 (B:1-228)
2c: SCOP_d1ze1c2 (C:1-228)
2d: SCOP_d1ze1d2 (D:1-228)
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Protein Domains
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(
)
Class
:
All beta proteins
(24004)
Fold
:
PUA domain-like
(96)
Superfamily
:
PUA domain-like
(96)
Family
:
PUA domain
(22)
Protein domain
:
Pseudouridine synthase II TruB, C-terminal domain
(11)
Thermotoga maritima [TaxId: 2336]
(4)
1a
d1ze1a1
A:229-308
1b
d1ze1b1
B:229-308
1c
d1ze1c1
C:229-308
1d
d1ze1d1
D:229-308
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Pseudouridine synthase
(30)
Superfamily
:
Pseudouridine synthase
(30)
Family
:
Pseudouridine synthase II TruB
(12)
Protein domain
:
Pseudouridine synthase II TruB
(11)
Thermotoga maritima [TaxId: 2336]
(4)
2a
d1ze1a2
A:1-228
2b
d1ze1b2
B:1-228
2c
d1ze1c2
C:1-228
2d
d1ze1d2
D:1-228
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CATH Domains
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_PUA_1ze1D01 (D:230-300)
1b: PFAM_PUA_1ze1D02 (D:230-300)
1c: PFAM_PUA_1ze1D03 (D:230-300)
1d: PFAM_PUA_1ze1D04 (D:230-300)
2a: PFAM_TruB_N_1ze1D05 (D:24-171)
2b: PFAM_TruB_N_1ze1D06 (D:24-171)
2c: PFAM_TruB_N_1ze1D07 (D:24-171)
2d: PFAM_TruB_N_1ze1D08 (D:24-171)
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Clans
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Organisms
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)
Clan
:
PUA
(42)
Family
:
PUA
(12)
Thermotoga maritima
(2)
1a
PUA-1ze1D01
D:230-300
1b
PUA-1ze1D02
D:230-300
1c
PUA-1ze1D03
D:230-300
1d
PUA-1ze1D04
D:230-300
Clan
:
no clan defined [family: TruB_N]
(12)
Family
:
TruB_N
(12)
Thermotoga maritima
(2)
2a
TruB_N-1ze1D05
D:24-171
2b
TruB_N-1ze1D06
D:24-171
2c
TruB_N-1ze1D07
D:24-171
2d
TruB_N-1ze1D08
D:24-171
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (204 KB)
Header - Asym.Unit
Biol.Unit 1 (54 KB)
Header - Biol.Unit 1
Biol.Unit 2 (53 KB)
Header - Biol.Unit 2
Biol.Unit 3 (54 KB)
Header - Biol.Unit 3
Biol.Unit 4 (50 KB)
Header - Biol.Unit 4
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