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1Z9O
Asym. Unit
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Asym.Unit (136 KB)
Biol.Unit 1 (128 KB)
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(1)
Title
:
1.9 ANGSTROM CRYSTAL STRUCTURE OF THE RAT VAP-A MSP HOMOLOGY DOMAIN IN COMPLEX WITH THE RAT ORP1 FFAT MOTIF
Authors
:
S. E. Kaiser, J. H. Brickner, A. R. Reilein, T. D. Fenn, P. Walter, A. T. Br
Date
:
03 Apr 05 (Deposition) - 19 Jul 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Keywords
:
Vap-33, Vap-A, Vap-B, Vap-C, Vapa, Vapb, Vapc, Vap-33A, Scs2, Erg30, Ffat Motif, Er, Endoplasmic Reticulum, Targeting, Immunoglobulin- Like Beta Sheet, Msp Homology Domain, Osbp, Orp, Oxysterol Binding Protein, Protein Binding-Lipid Binding Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. E. Kaiser, J. H. Brickner, A. R. Reilein, T. D. Fenn, P. Walter, A. T. Brunger
Structural Basis Of Ffat Motif-Mediated Er Targeting
Structure V. 13 1035 2005
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Hetero Components
(0, 0)
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Sites
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: MSP (A:7-124,B:7-124,C:7-124,D:7-124,E:...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MSP
PS50202
Major sperm protein (MSP) domain profile.
VAPA_RAT
14-131
6
A:7-124
B:7-124
C:7-124
D:7-124
E:7-124
F:7-124
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Exons
(4, 24)
Info
All Exons
Exon 1.1 (A:5-20 | B:5-20 | C:5-20 | D:5-20 ...)
Exon 1.2 (A:20-71 | B:20-71 | C:20-71 | D:20...)
Exon 1.3 (A:71-105 (gaps) | B:71-105 (gaps) ...)
Exon 1.4 (A:106-125 | B:106-125 | C:106-125 ...)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000020681
1
ENSRNOE00000228922
chr9:
104368908-104368599
310
VAPA_RAT
1-27
27
6
A:5-20
B:5-20
C:5-20
D:5-20
E:5-20
F:5-20
16
16
16
16
16
16
1.2
ENSRNOT00000020681
2
ENSRNOE00000143212
chr9:
104351695-104351543
153
VAPA_RAT
27-78
52
6
A:20-71
B:20-71
C:20-71
D:20-71
E:20-71
F:20-71
52
52
52
52
52
52
1.3
ENSRNOT00000020681
3
ENSRNOE00000143785
chr9:
104350873-104350770
104
VAPA_RAT
78-112
35
6
A:71-105 (gaps)
B:71-105 (gaps)
C:71-105 (gaps)
D:71-105 (gaps)
E:71-105 (gaps)
F:71-105 (gaps)
35
35
35
35
35
35
1.4
ENSRNOT00000020681
4
ENSRNOE00000144310
chr9:
104350054-104349974
81
VAPA_RAT
113-139
27
6
A:106-125
B:106-125
C:106-125
D:106-125
E:106-125
F:106-125
20
20
20
20
20
20
1.5
ENSRNOT00000020681
5
ENSRNOE00000144838
chr9:
104341327-104341154
174
VAPA_RAT
140-197
58
0
-
-
1.6
ENSRNOT00000020681
6
ENSRNOE00000228905
chr9:
104339821-104339042
780
VAPA_RAT
198-249
52
0
-
-
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SCOP Domains
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CATH Domains
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Motile_Sperm_1z9oF01 (F:7-113)
1b: PFAM_Motile_Sperm_1z9oF02 (F:7-113)
1c: PFAM_Motile_Sperm_1z9oF03 (F:7-113)
1d: PFAM_Motile_Sperm_1z9oF04 (F:7-113)
1e: PFAM_Motile_Sperm_1z9oF05 (F:7-113)
1f: PFAM_Motile_Sperm_1z9oF06 (F:7-113)
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Clans
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Organisms
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Clan
:
no clan defined [family: Motile_Sperm]
(7)
Family
:
Motile_Sperm
(7)
Rattus norvegicus (Rat)
(1)
1a
Motile_Sperm-1z9oF01
F:7-113
1b
Motile_Sperm-1z9oF02
F:7-113
1c
Motile_Sperm-1z9oF03
F:7-113
1d
Motile_Sperm-1z9oF04
F:7-113
1e
Motile_Sperm-1z9oF05
F:7-113
1f
Motile_Sperm-1z9oF06
F:7-113
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