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1Z9H
Biol. Unit 3
Info
Asym.Unit (187 KB)
Biol.Unit 1 (93 KB)
Biol.Unit 2 (93 KB)
Biol.Unit 3 (362 KB)
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(1)
Title
:
MICROSOMAL PROSTAGLANDIN E SYNTHASE TYPE-2
Authors
:
T. Yamada, J. Komoto, K. Watanabe, Y. Ohmiya, F. Takusagawa
Date
:
02 Apr 05 (Deposition) - 17 May 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B,C,D (2x)
Keywords
:
Membran Associated Protein, Prostaglandin E Synthase, Indomethacin, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Yamada, J. Komoto, K. Watanabe, Y. Ohmiya, F. Takusagawa
Crystal Structure And Possible Catalytic Mechanism Of Microsomal Prostaglandin E Synthase Type 2 (Mpges-2).
J. Mol. Biol. V. 348 1163 2005
(for further references see the
PDB file header
)
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Hetero Components
(2, 16)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: INDOMETHACIN (IMNa)
3b: INDOMETHACIN (IMNb)
3c: INDOMETHACIN (IMNc)
3d: INDOMETHACIN (IMNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
8
Ligand/Ion
ACETATE ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
IMN
8
Ligand/Ion
INDOMETHACIN
[
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]
Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:137 , ARG A:146 , TYR D:287
BINDING SITE FOR RESIDUE CL D 378
02
AC2
SOFTWARE
MET A:286
BINDING SITE FOR RESIDUE ACT A 378
03
AC3
SOFTWARE
ARG B:137 , TYR C:287
BINDING SITE FOR RESIDUE CL B 378
04
AC4
SOFTWARE
MET B:286
BINDING SITE FOR RESIDUE ACT B 379
05
AC5
SOFTWARE
TYR B:287 , ARG C:137
BINDING SITE FOR RESIDUE CL B 380
06
AC6
SOFTWARE
MET C:286
BINDING SITE FOR RESIDUE ACT C 378
07
AC7
SOFTWARE
TYR A:287 , ARG D:137
BINDING SITE FOR RESIDUE CL D 475
08
AC8
SOFTWARE
MET D:286
BINDING SITE FOR RESIDUE ACT D 477
09
AC9
SOFTWARE
TYR A:107 , THR A:109 , CYS A:110 , PRO A:111 , PHE A:112 , PRO A:134 , ILE A:246 , VAL A:250 , TYR A:251 , SER A:260 , TYR A:263 , ILE A:264 , VAL A:343 , LEU A:347
BINDING SITE FOR RESIDUE IMN A 379
10
BC1
SOFTWARE
HOH B:2 , TYR B:107 , THR B:109 , CYS B:110 , PRO B:111 , PHE B:112 , PRO B:134 , ILE B:246 , VAL B:250 , TYR B:251 , SER B:260 , TYR B:263 , ILE B:264 , VAL B:343 , LEU B:347
BINDING SITE FOR RESIDUE IMN B 381
11
BC2
SOFTWARE
TYR C:107 , THR C:109 , CYS C:110 , PRO C:111 , PHE C:112 , PRO C:134 , ILE C:246 , VAL C:250 , TYR C:251 , SER C:260 , TYR C:263 , ILE C:264 , VAL C:343 , LEU C:347
BINDING SITE FOR RESIDUE IMN C 379
12
BC3
SOFTWARE
TYR D:107 , THR D:109 , CYS D:110 , PRO D:111 , PHE D:112 , PRO D:134 , ILE D:246 , VAL D:250 , TYR D:251 , SER D:260 , TYR D:263 , ILE D:264 , VAL D:343 , LEU D:347 , HOH D:478
BINDING SITE FOR RESIDUE IMN D 476
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 16)
Info
All PROSITE Patterns/Profiles
1: GLUTAREDOXIN_1 (A:104-120,B:104-120,C:104-120,D:10...)
2: GST_CTER (A:263-373,B:263-373,C:263-373,D:26...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLUTAREDOXIN_1
PS00195
Glutaredoxin active site.
PGES2_MACFA
104-120
8
A:104-120
B:104-120
C:104-120
D:104-120
2
GST_CTER
PS50405
Soluble glutathione S-transferase C-terminal domain profile.
PGES2_MACFA
263-377
8
A:263-373
B:263-373
C:263-373
D:263-373
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1z9ha1 (A:213-373)
1b: SCOP_d1z9hb1 (B:213-373)
1c: SCOP_d1z9hc1 (C:213-373)
1d: SCOP_d1z9hd1 (D:213-373)
2a: SCOP_d1z9ha2 (A:100-212)
2b: SCOP_d1z9hb2 (B:100-212)
2c: SCOP_d1z9hc2 (C:100-212)
2d: SCOP_d1z9hd2 (D:100-212)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
Glutathione S-transferase (GST), C-terminal domain
(263)
Protein domain
:
Microsomal prostaglandin E synthase-2
(2)
Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]
(2)
1a
d1z9ha1
A:213-373
1b
d1z9hb1
B:213-373
1c
d1z9hc1
C:213-373
1d
d1z9hd1
D:213-373
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione S-transferase (GST), N-terminal domain
(216)
Protein domain
:
Microsomal prostaglandin E synthase-2
(2)
Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]
(2)
2a
d1z9ha2
A:100-212
2b
d1z9hb2
B:100-212
2c
d1z9hc2
C:100-212
2d
d1z9hd2
D:100-212
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_GST_C_1z9hD01 (D:277-369)
1b: PFAM_GST_C_1z9hD02 (D:277-369)
1c: PFAM_GST_C_1z9hD03 (D:277-369)
1d: PFAM_GST_C_1z9hD04 (D:277-369)
2a: PFAM_Glutaredoxin_1z9hD05 (D:102-158)
2b: PFAM_Glutaredoxin_1z9hD06 (D:102-158)
2c: PFAM_Glutaredoxin_1z9hD07 (D:102-158)
2d: PFAM_Glutaredoxin_1z9hD08 (D:102-158)
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Clans
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)
(
)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
GST_C
(118)
Family
:
GST_C
(102)
Macaca fascicularis (Crab-eating macaque) (Cynomolgus monkey)
(2)
1a
GST_C-1z9hD01
D:277-369
1b
GST_C-1z9hD02
D:277-369
1c
GST_C-1z9hD03
D:277-369
1d
GST_C-1z9hD04
D:277-369
Clan
:
Thioredoxin
(367)
Family
:
Glutaredoxin
(22)
Macaca fascicularis (Crab-eating macaque) (Cynomolgus monkey)
(2)
2a
Glutaredoxin-1z9hD05
D:102-158
2b
Glutaredoxin-1z9hD06
D:102-158
2c
Glutaredoxin-1z9hD07
D:102-158
2d
Glutaredoxin-1z9hD08
D:102-158
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Asym.Unit (187 KB)
Header - Asym.Unit
Biol.Unit 1 (93 KB)
Header - Biol.Unit 1
Biol.Unit 2 (93 KB)
Header - Biol.Unit 2
Biol.Unit 3 (362 KB)
Header - Biol.Unit 3
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