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1Z9H
Asym. Unit
Info
Asym.Unit (187 KB)
Biol.Unit 1 (93 KB)
Biol.Unit 2 (93 KB)
Biol.Unit 3 (362 KB)
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(1)
Title
:
MICROSOMAL PROSTAGLANDIN E SYNTHASE TYPE-2
Authors
:
T. Yamada, J. Komoto, K. Watanabe, Y. Ohmiya, F. Takusagawa
Date
:
02 Apr 05 (Deposition) - 17 May 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B,C,D (2x)
Keywords
:
Membran Associated Protein, Prostaglandin E Synthase, Indomethacin, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Yamada, J. Komoto, K. Watanabe, Y. Ohmiya, F. Takusagawa
Crystal Structure And Possible Catalytic Mechanism Of Microsomal Prostaglandin E Synthase Type 2 (Mpges-2).
J. Mol. Biol. V. 348 1163 2005
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: INDOMETHACIN (IMNa)
3b: INDOMETHACIN (IMNb)
3c: INDOMETHACIN (IMNc)
3d: INDOMETHACIN (IMNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
4
Ligand/Ion
ACETATE ION
2
CL
4
Ligand/Ion
CHLORIDE ION
3
IMN
4
Ligand/Ion
INDOMETHACIN
[
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]
Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:137 , ARG A:146 , TYR D:287
BINDING SITE FOR RESIDUE CL D 378
02
AC2
SOFTWARE
MET A:286
BINDING SITE FOR RESIDUE ACT A 378
03
AC3
SOFTWARE
ARG B:137 , TYR C:287
BINDING SITE FOR RESIDUE CL B 378
04
AC4
SOFTWARE
MET B:286
BINDING SITE FOR RESIDUE ACT B 379
05
AC5
SOFTWARE
TYR B:287 , ARG C:137
BINDING SITE FOR RESIDUE CL B 380
06
AC6
SOFTWARE
MET C:286
BINDING SITE FOR RESIDUE ACT C 378
07
AC7
SOFTWARE
TYR A:287 , ARG D:137
BINDING SITE FOR RESIDUE CL D 475
08
AC8
SOFTWARE
MET D:286
BINDING SITE FOR RESIDUE ACT D 477
09
AC9
SOFTWARE
TYR A:107 , THR A:109 , CYS A:110 , PRO A:111 , PHE A:112 , PRO A:134 , ILE A:246 , VAL A:250 , TYR A:251 , SER A:260 , TYR A:263 , ILE A:264 , VAL A:343 , LEU A:347
BINDING SITE FOR RESIDUE IMN A 379
10
BC1
SOFTWARE
HOH B:2 , TYR B:107 , THR B:109 , CYS B:110 , PRO B:111 , PHE B:112 , PRO B:134 , ILE B:246 , VAL B:250 , TYR B:251 , SER B:260 , TYR B:263 , ILE B:264 , VAL B:343 , LEU B:347
BINDING SITE FOR RESIDUE IMN B 381
11
BC2
SOFTWARE
TYR C:107 , THR C:109 , CYS C:110 , PRO C:111 , PHE C:112 , PRO C:134 , ILE C:246 , VAL C:250 , TYR C:251 , SER C:260 , TYR C:263 , ILE C:264 , VAL C:343 , LEU C:347
BINDING SITE FOR RESIDUE IMN C 379
12
BC3
SOFTWARE
TYR D:107 , THR D:109 , CYS D:110 , PRO D:111 , PHE D:112 , PRO D:134 , ILE D:246 , VAL D:250 , TYR D:251 , SER D:260 , TYR D:263 , ILE D:264 , VAL D:343 , LEU D:347 , HOH D:478
BINDING SITE FOR RESIDUE IMN D 476
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: GLUTAREDOXIN_1 (A:104-120,B:104-120,C:104-120,D:10...)
2: GST_CTER (A:263-373,B:263-373,C:263-373,D:26...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLUTAREDOXIN_1
PS00195
Glutaredoxin active site.
PGES2_MACFA
104-120
4
A:104-120
B:104-120
C:104-120
D:104-120
2
GST_CTER
PS50405
Soluble glutathione S-transferase C-terminal domain profile.
PGES2_MACFA
263-377
4
A:263-373
B:263-373
C:263-373
D:263-373
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1z9ha1 (A:213-373)
1b: SCOP_d1z9hb1 (B:213-373)
1c: SCOP_d1z9hc1 (C:213-373)
1d: SCOP_d1z9hd1 (D:213-373)
2a: SCOP_d1z9ha2 (A:100-212)
2b: SCOP_d1z9hb2 (B:100-212)
2c: SCOP_d1z9hc2 (C:100-212)
2d: SCOP_d1z9hd2 (D:100-212)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
Glutathione S-transferase (GST), C-terminal domain
(263)
Protein domain
:
Microsomal prostaglandin E synthase-2
(2)
Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]
(2)
1a
d1z9ha1
A:213-373
1b
d1z9hb1
B:213-373
1c
d1z9hc1
C:213-373
1d
d1z9hd1
D:213-373
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione S-transferase (GST), N-terminal domain
(216)
Protein domain
:
Microsomal prostaglandin E synthase-2
(2)
Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]
(2)
2a
d1z9ha2
A:100-212
2b
d1z9hb2
B:100-212
2c
d1z9hc2
C:100-212
2d
d1z9hd2
D:100-212
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_GST_C_1z9hD01 (D:277-369)
1b: PFAM_GST_C_1z9hD02 (D:277-369)
1c: PFAM_GST_C_1z9hD03 (D:277-369)
1d: PFAM_GST_C_1z9hD04 (D:277-369)
2a: PFAM_Glutaredoxin_1z9hD05 (D:102-158)
2b: PFAM_Glutaredoxin_1z9hD06 (D:102-158)
2c: PFAM_Glutaredoxin_1z9hD07 (D:102-158)
2d: PFAM_Glutaredoxin_1z9hD08 (D:102-158)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
GST_C
(118)
Family
:
GST_C
(102)
Macaca fascicularis (Crab-eating macaque) (Cynomolgus monkey)
(2)
1a
GST_C-1z9hD01
D:277-369
1b
GST_C-1z9hD02
D:277-369
1c
GST_C-1z9hD03
D:277-369
1d
GST_C-1z9hD04
D:277-369
Clan
:
Thioredoxin
(367)
Family
:
Glutaredoxin
(22)
Macaca fascicularis (Crab-eating macaque) (Cynomolgus monkey)
(2)
2a
Glutaredoxin-1z9hD05
D:102-158
2b
Glutaredoxin-1z9hD06
D:102-158
2c
Glutaredoxin-1z9hD07
D:102-158
2d
Glutaredoxin-1z9hD08
D:102-158
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Asymmetric Unit 1
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Asym.Unit (187 KB)
Header - Asym.Unit
Biol.Unit 1 (93 KB)
Header - Biol.Unit 1
Biol.Unit 2 (93 KB)
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Biol.Unit 3 (362 KB)
Header - Biol.Unit 3
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