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1Z68
Asym. Unit
Info
Asym.Unit (262 KB)
Biol.Unit 1 (253 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN FIBROBLAST ACTIVATION PROTEIN ALPHA
Authors
:
K. Aertgeerts, I. Levin, L. Shi, G. S. Prasad, Y. Zhang, M. L. Kraus, S. Sa G. P. Snell, V. Sridhar, R. Wijnands, M. G. Tennant
Date
:
21 Mar 05 (Deposition) - 12 Apr 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Seprase, Fibroblast Activation Protein Alpha, Fapalpha, Dipeptidylpeptidase, S9B, Integral Membrane Serine Protease, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Aertgeerts, I. Levin, L. Shi, G. P. Snell, A. Jennings, G. S. Prasad, Y. Zhang, M. L. Kraus, S. Salakian, V. Sridhar, R. Wijnands, M. G. Tennant
Structural And Kinetic Analysis Of The Substrate Specificit Of Human Fibroblast Activation Protein Alpha.
J. Biol. Chem. V. 280 19441 2005
[
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
1e: N-ACETYL-D-GLUCOSAMINE (NAGe)
1f: N-ACETYL-D-GLUCOSAMINE (NAGf)
1g: N-ACETYL-D-GLUCOSAMINE (NAGg)
1h: N-ACETYL-D-GLUCOSAMINE (NAGh)
1i: N-ACETYL-D-GLUCOSAMINE (NAGi)
1j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
2b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
2
NDG
2
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:49 , THR A:51 , HOH A:9406
BINDING SITE FOR RESIDUE NAG A 4901
02
AC2
SOFTWARE
ASP A:73 , ASN A:75 , ASN A:92 , NAG A:9202
BINDING SITE FOR RESIDUE NAG A 9201
03
AC3
SOFTWARE
NAG A:9201
BINDING SITE FOR RESIDUE NAG A 9202
04
AC4
SOFTWARE
ASN A:227 , THR A:229 , NAG A:2272
BINDING SITE FOR RESIDUE NDG A 2271
05
AC5
SOFTWARE
NDG A:2271
BINDING SITE FOR RESIDUE NAG A 2272
06
AC6
SOFTWARE
ASN A:314 , SER A:342 , ASP A:672 , HOH A:9384
BINDING SITE FOR RESIDUE NAG A 3141
07
AC7
SOFTWARE
LYS B:45 , ASN B:49 , THR B:51 , HOH B:9615
BINDING SITE FOR RESIDUE NAG B 4901
08
AC8
SOFTWARE
ASP B:73 , ASN B:75 , ASN B:92 , NAG B:9202
BINDING SITE FOR RESIDUE NAG B 9201
09
AC9
SOFTWARE
NAG B:9201 , HOH B:9586
BINDING SITE FOR RESIDUE NAG B 9202
10
BC1
SOFTWARE
GLU B:225 , ASN B:227 , THR B:229 , ARG B:263 , HOH B:9618
BINDING SITE FOR RESIDUE NAG B 2271
11
BC2
SOFTWARE
VAL B:312 , ASN B:314 , SER B:342 , ARG B:343 , TYR B:589 , HOH B:9433
BINDING SITE FOR RESIDUE NDG B 3141
12
BC3
SOFTWARE
GLU B:675 , ASN B:679
BINDING SITE FOR RESIDUE NAG B 6791
[
close Site info
]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_071264 (S363L, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_071264
S
363
L
SEPR_HUMAN
Unclassified
---
A/B
S
363
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
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Exons
(24, 48)
Info
All Exons
Exon 1.4 (A:39-64 | B:39-64)
Exon 1.5 (A:64-95 | B:64-95)
Exon 1.6 (A:96-120 | B:96-120)
Exon 1.7b (A:121-138 | B:121-138)
Exon 1.9b (A:138-162 | B:138-162)
Exon 1.10b (A:163-203 | B:163-203)
Exon 1.11 (A:203-254 | B:203-254)
Exon 1.12 (A:255-289 | B:255-289)
Exon 1.13 (A:289-334 | B:289-334)
Exon 1.14a (A:335-349 | B:335-349)
Exon 1.15 (A:350-384 | B:350-384)
Exon 1.16 (A:385-408 | B:385-408)
Exon 1.17 (A:408-426 | B:408-426)
Exon 1.18a (A:426-468 | B:426-468)
Exon 1.21b (A:468-484 | B:468-484)
Exon 1.23 (A:484-517 | B:484-517)
Exon 1.24 (A:517-540 | B:517-540)
Exon 1.25b (A:540-605 | B:540-605)
Exon 1.26b (A:605-623 | B:605-623)
Exon 1.27b (A:624-657 | B:624-657)
Exon 1.28a (A:657-678 | B:657-678)
Exon 1.29a (A:679-703 | B:679-703)
Exon 1.30b (A:703-727 | B:703-727)
Exon 1.31b (A:728-757 | B:728-757)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.3b/1.4
02: Boundary 1.4/1.5
03: Boundary 1.5/1.6
04: Boundary 1.6/1.7b
05: Boundary 1.7b/1.9b
06: Boundary 1.9b/1.10b
07: Boundary 1.10b/1.11
08: Boundary 1.11/1.12
09: Boundary 1.12/1.13
10: Boundary 1.13/1.14a
11: Boundary 1.14a/1.15
12: Boundary 1.15/1.16
13: Boundary 1.16/1.17
14: Boundary 1.17/1.18a
15: Boundary 1.18a/1.21b
16: Boundary 1.21b/1.23
17: Boundary 1.23/1.24
18: Boundary 1.24/1.25b
19: Boundary 1.25b/1.26b
20: Boundary 1.26b/1.27b
21: Boundary 1.27b/1.28a
22: Boundary 1.28a/1.29a
23: Boundary 1.29a/1.30b
24: Boundary 1.30b/1.31b
25: Boundary 1.31b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000188790
2a
ENSE00001378583
chr2:
163100045-163099832
214
SEPR_HUMAN
1-2
2
0
-
-
1.3b
ENST00000188790
3b
ENSE00000779556
chr2:
163099502-163099418
85
SEPR_HUMAN
3-31
29
0
-
-
1.4
ENST00000188790
4
ENSE00000779554
chr2:
163083131-163083033
99
SEPR_HUMAN
31-64
34
2
A:39-64
B:39-64
26
26
1.5
ENST00000188790
5
ENSE00000779552
chr2:
163082087-163081993
95
SEPR_HUMAN
64-95
32
2
A:64-95
B:64-95
32
32
1.6
ENST00000188790
6
ENSE00000779551
chr2:
163081050-163080976
75
SEPR_HUMAN
96-120
25
2
A:96-120
B:96-120
25
25
1.7b
ENST00000188790
7b
ENSE00000779550
chr2:
163080170-163080118
53
SEPR_HUMAN
121-138
18
2
A:121-138
B:121-138
18
18
1.9b
ENST00000188790
9b
ENSE00000779549
chr2:
163076435-163076363
73
SEPR_HUMAN
138-162
25
2
A:138-162
B:138-162
25
25
1.10b
ENST00000188790
10b
ENSE00000779548
chr2:
163075693-163075573
121
SEPR_HUMAN
163-203
41
2
A:163-203
B:163-203
41
41
1.11
ENST00000188790
11
ENSE00000779547
chr2:
163074650-163074496
155
SEPR_HUMAN
203-254
52
2
A:203-254
B:203-254
52
52
1.12
ENST00000188790
12
ENSE00000779546
chr2:
163072511-163072408
104
SEPR_HUMAN
255-289
35
2
A:255-289
B:255-289
35
35
1.13
ENST00000188790
13
ENSE00000779545
chr2:
163070583-163070448
136
SEPR_HUMAN
289-334
46
2
A:289-334
B:289-334
46
46
1.14a
ENST00000188790
14a
ENSE00000779544
chr2:
163066506-163066462
45
SEPR_HUMAN
335-349
15
2
A:335-349
B:335-349
15
15
1.15
ENST00000188790
15
ENSE00000779543
chr2:
163059655-163059551
105
SEPR_HUMAN
350-384
35
2
A:350-384
B:350-384
35
35
1.16
ENST00000188790
16
ENSE00000779542
chr2:
163059452-163059382
71
SEPR_HUMAN
385-408
24
2
A:385-408
B:385-408
24
24
1.17
ENST00000188790
17
ENSE00000779541
chr2:
163057129-163057076
54
SEPR_HUMAN
408-426
19
2
A:408-426
B:408-426
19
19
1.18a
ENST00000188790
18a
ENSE00000779540
chr2:
163055391-163055267
125
SEPR_HUMAN
426-468
43
2
A:426-468
B:426-468
43
43
1.21b
ENST00000188790
21b
ENSE00001665588
chr2:
163051258-163051211
48
SEPR_HUMAN
468-484
17
2
A:468-484
B:468-484
17
17
1.23
ENST00000188790
23
ENSE00001709931
chr2:
163046264-163046166
99
SEPR_HUMAN
484-517
34
2
A:484-517
B:484-517
34
34
1.24
ENST00000188790
24
ENSE00001647949
chr2:
163045682-163045613
70
SEPR_HUMAN
517-540
24
2
A:517-540
B:517-540
24
24
1.25b
ENST00000188790
25b
ENSE00001720161
chr2:
163044873-163044679
195
SEPR_HUMAN
540-605
66
2
A:540-605
B:540-605
66
66
1.26b
ENST00000188790
26b
ENSE00001708450
chr2:
163039978-163039924
55
SEPR_HUMAN
605-623
19
2
A:605-623
B:605-623
19
19
1.27b
ENST00000188790
27b
ENSE00001633592
chr2:
163031476-163031377
100
SEPR_HUMAN
624-657
34
2
A:624-657
B:624-657
34
34
1.28a
ENST00000188790
28a
ENSE00001717318
chr2:
163030297-163030233
65
SEPR_HUMAN
657-678
22
2
A:657-678
B:657-678
22
22
1.29a
ENST00000188790
29a
ENSE00001633925
chr2:
163029731-163029659
73
SEPR_HUMAN
679-703
25
2
A:679-703
B:679-703
25
25
1.30b
ENST00000188790
30b
ENSE00001703871
chr2:
163029394-163029321
74
SEPR_HUMAN
703-727
25
2
A:703-727
B:703-727
25
25
1.31b
ENST00000188790
31b
ENSE00001881676
chr2:
163027590-163027200
391
SEPR_HUMAN
728-760
33
2
A:728-757
B:728-757
30
30
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
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Sorry, no Info available
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1z68A02 (A:503-757)
1b: CATH_1z68B02 (B:503-757)
2a: CATH_1z68A01 (A:39-502)
2b: CATH_1z68B01 (B:39-502)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Human (Homo sapiens)
(118)
1a
1z68A02
A:503-757
1b
1z68B02
B:503-757
Class
:
Mainly Beta
(13760)
Architecture
:
8 Propellor
(110)
Topology
:
Methanol Dehydrogenase; Chain A
(110)
Homologous Superfamily
:
[code=2.140.10.30, no name defined]
(74)
Human (Homo sapiens)
(59)
2a
1z68A01
A:39-502
2b
1z68B01
B:39-502
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Peptidase_S9_1z68B01 (B:553-757)
1b: PFAM_Peptidase_S9_1z68B02 (B:553-757)
2a: PFAM_DPPIV_N_1z68B03 (B:106-473)
2b: PFAM_DPPIV_N_1z68B04 (B:106-473)
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Clans
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Organisms
(
)
(
)
Clan
:
AB_hydrolase
(347)
Family
:
Peptidase_S9
(57)
Homo sapiens (Human)
(33)
1a
Peptidase_S9-1z68B01
B:553-757
1b
Peptidase_S9-1z68B02
B:553-757
Clan
:
Beta_propeller
(192)
Family
:
DPPIV_N
(38)
Homo sapiens (Human)
(33)
2a
DPPIV_N-1z68B03
B:106-473
2b
DPPIV_N-1z68B04
B:106-473
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