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1Z5H
Biol. Unit 1
Info
Asym.Unit (277 KB)
Biol.Unit 1 (139 KB)
Biol.Unit 2 (137 KB)
Biol.Unit 3 (538 KB)
Biol.Unit 4 (271 KB)
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(1)
Title
:
CRYSTAL STRUCTURES OF THE TRICORN INTERACTING FACTOR F3 FROM THERMOPLASMA ACIDOPHILUM
Authors
:
O. J. P. Kyrieleis, P. Goettig, R. Kiefersauer, R. Huber, H. Brandstetter
Date
:
18 Mar 05 (Deposition) - 28 Jun 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (2x)
Biol. Unit 4: A,B (1x)
Keywords
:
Zinc Aminopeptidase, Gluzicins, Tricorn Protease, Superhelix, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. J. P. Kyrieleis, P. Goettig, R. Kiefersauer, R. Huber, H. Brandstetter
Crystal Structures Of The Tricorn Interacting Factor F3 From Thermoplasma Acidophilum, A Zinc Aminopeptidase In Three Different Conformations
J. Mol. Biol. V. 349 787 2005
(for further references see the
PDB file header
)
[
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]
Hetero Components
(1, 13)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
1k: SULFATE ION (SO4k)
1l: SULFATE ION (SO4l)
1m: SULFATE ION (SO4m)
1n: SULFATE ION (SO4n)
1o: SULFATE ION (SO4o)
1p: SULFATE ION (SO4p)
1q: SULFATE ION (SO4q)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
13
Ligand/Ion
SULFATE ION
2
ZN
-1
Ligand/Ion
ZINC ION
[
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]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC5 (SOFTWARE)
05: AC6 (SOFTWARE)
06: AC7 (SOFTWARE)
07: AC8 (SOFTWARE)
08: AC9 (SOFTWARE)
09: BC1 (SOFTWARE)
10: BC2 (SOFTWARE)
11: BC4 (SOFTWARE)
12: BC5 (SOFTWARE)
13: BC6 (SOFTWARE)
14: BC7 (SOFTWARE)
15: BC8 (SOFTWARE)
16: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:708 , ARG A:711 , ARG A:715 , HOH A:2081 , HOH A:2261 , HOH A:2404
BINDING SITE FOR RESIDUE SO4 A 1001
02
AC2
SOFTWARE
LYS A:677 , THR A:718 , HOH A:2342 , HOH A:2433
BINDING SITE FOR RESIDUE SO4 A 1002
03
AC3
SOFTWARE
TYR A:409 , ARG A:444 , TYR B:172 , TYR B:174 , HOH B:2118
BINDING SITE FOR RESIDUE SO4 A 1003
04
AC5
SOFTWARE
THR A:559 , HIS A:560 , HOH A:2143 , SER B:602
BINDING SITE FOR RESIDUE SO4 A 1005
05
AC6
SOFTWARE
TYR A:194 , LYS A:256 , ARG A:257 , PHE A:303
BINDING SITE FOR RESIDUE SO4 A 1006
06
AC7
SOFTWARE
PRO A:505 , ARG A:508
BINDING SITE FOR RESIDUE SO4 A 1007
07
AC8
SOFTWARE
PHE A:516 , GLY A:550
BINDING SITE FOR RESIDUE SO4 A 1008
08
AC9
SOFTWARE
LYS A:677 , LYS A:682 , PHE A:717 , HOH A:2102 , HOH A:2322
BINDING SITE FOR RESIDUE SO4 A 1009
09
BC1
SOFTWARE
GLU A:440 , SER A:521 , GLY A:522 , HIS A:523 , HOH A:2039 , HOH A:2120 , HOH A:2210 , LYS B:140 , ARG B:141
BINDING SITE FOR RESIDUE SO4 A 1010
10
BC2
SOFTWARE
TYR A:174 , TYR B:409 , ASN B:413 , PRO B:414 , ARG B:444 , TRP B:445 , HOH B:2031 , HOH B:2125 , HOH B:2207
BINDING SITE FOR RESIDUE SO4 B 1011
11
BC4
SOFTWARE
SER A:602 , THR B:559 , HIS B:560 , ALA B:561
BINDING SITE FOR RESIDUE SO4 B 1013
12
BC5
SOFTWARE
LYS A:140 , ARG A:141 , GLU A:151 , SO4 A:1015
BINDING SITE FOR RESIDUE SO4 A 1014
13
BC6
SOFTWARE
LYS A:140 , SO4 A:1014 , HOH B:2308
BINDING SITE FOR RESIDUE SO4 A 1015
14
BC7
SOFTWARE
LYS A:580 , GLN A:581 , ASP A:582 , HOH A:2391
BINDING SITE FOR RESIDUE SO4 A 1016
15
BC8
SOFTWARE
ARG A:648 , ASP A:649 , GLU A:650
BINDING SITE FOR RESIDUE SO4 A 1017
16
BC9
SOFTWARE
HIS A:265 , HIS A:269 , GLU A:288 , HOH A:2440
BINDING SITE FOR RESIDUE ZN A 2001
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (A:262-271)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
TRF3_THEAC
262-271
1
A:262-271
-
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(4, 8)
Info
All SCOP Domains
1a: SCOP_d1z5ha4 (A:490-780)
1b: SCOP_d1z5hb4 (B:490-780)
2a: SCOP_d1z5ha3 (A:415-489)
2b: SCOP_d1z5hb3 (B:415-489)
3a: SCOP_d1z5ha1 (A:1-170)
3b: SCOP_d1z5hb1 (B:1-170)
4a: SCOP_d1z5ha2 (A:171-414)
4b: SCOP_d1z5hb2 (B:171-414)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
ARM repeat
(317)
Family
:
ERAP1 C-terminal-like
(4)
Protein domain
:
Tricorn protease interacting factor F3 C-terminal domain
(2)
Thermoplasma acidophilum [TaxId: 2303]
(2)
1a
d1z5ha4
A:490-780
1b
d1z5hb4
B:490-780
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Zn aminopeptidase insert domain
(10)
Family
:
Zn aminopeptidase insert domain
(4)
Protein domain
:
Tricorn protease interacting factor F3 insert domain
(2)
Thermoplasma acidophilum [TaxId: 2303]
(2)
2a
d1z5ha3
A:415-489
2b
d1z5hb3
B:415-489
Fold
:
Zn aminopeptidase N-terminal domain
(55)
Superfamily
:
Zn aminopeptidase N-terminal domain
(55)
Family
:
Zn aminopeptidase N-terminal domain
(49)
Protein domain
:
Tricorn protease interacting factor F3 N-terminal domain
(2)
Thermoplasma acidophilum [TaxId: 2303]
(2)
3a
d1z5ha1
A:1-170
3b
d1z5hb1
B:1-170
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Zn aminopeptidase catalytic domain
(49)
Protein domain
:
Tricorn protease interacting factor F3 catalytic domain
(2)
Thermoplasma acidophilum [TaxId: 2303]
(2)
4a
d1z5ha2
A:171-414
4b
d1z5hb2
B:171-414
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Peptidase_M1_1z5hB01 (B:1-354)
1b: PFAM_Peptidase_M1_1z5hB02 (B:1-354)
2a: PFAM_DUF3358_1z5hB03 (B:473-744)
2b: PFAM_DUF3358_1z5hB04 (B:473-744)
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Clans
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Families
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Organisms
(
)
(
)
Clan
:
Peptidase_MA
(251)
Family
:
Peptidase_M1
(15)
Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
(2)
1a
Peptidase_M1-1z5hB01
B:1-354
1b
Peptidase_M1-1z5hB02
B:1-354
Clan
:
no clan defined [family: DUF3358]
(5)
Family
:
DUF3358
(5)
Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
(2)
2a
DUF3358-1z5hB03
B:473-744
2b
DUF3358-1z5hB04
B:473-744
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Asymmetric Unit 1
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Asym.Unit (277 KB)
Header - Asym.Unit
Biol.Unit 1 (139 KB)
Header - Biol.Unit 1
Biol.Unit 2 (137 KB)
Header - Biol.Unit 2
Biol.Unit 3 (538 KB)
Header - Biol.Unit 3
Biol.Unit 4 (271 KB)
Header - Biol.Unit 4
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