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1Z5B
Asym. Unit
Info
Asym.Unit (165 KB)
Biol.Unit 1 (158 KB)
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(1)
Title
:
TOPOISOMERASE VI-B, ADP ALF4- BOUND DIMER FORM
Authors
:
K. D. Corbett, J. M. Berger
Date
:
17 Mar 05 (Deposition) - 14 Jun 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Topoisomerase, Archaea, Atpase, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
K. D. Corbett, J. M. Berger
Structural Dissection Of Atp Turnover In The Prototypical Ghl Atpase Topovi.
Structure V. 13 873 2005
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2a: TETRAFLUOROALUMINATE ION (ALFa)
2b: TETRAFLUOROALUMINATE ION (ALFb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
4a: SULFATE ION (SO4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
ALF
2
Ligand/Ion
TETRAFLUOROALUMINATE ION
3
MG
3
Ligand/Ion
MAGNESIUM ION
4
SO4
1
Ligand/Ion
SULFATE ION
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:42 , ADP A:1001 , ALF A:3001 , HOH A:4038 , HOH A:4136
BINDING SITE FOR RESIDUE MG A 2001
2
AC2
SOFTWARE
GLU A:38 , GLY A:106 , MET A:107 , TYR A:108 , GLY A:109 , LEU A:110 , GLY A:111 , LYS A:427 , ADP A:1001 , MG A:2001 , HOH A:4002 , HOH A:4038 , HOH A:4136 , HOH A:4137
BINDING SITE FOR RESIDUE ALF A 3001
3
AC3
SOFTWARE
ASN B:42 , ADP B:1002 , ALF B:3002 , HOH B:3008 , HOH B:3165
BINDING SITE FOR RESIDUE MG B 2002
4
AC4
SOFTWARE
GLU B:38 , GLY B:106 , MET B:107 , TYR B:108 , GLY B:109 , LEU B:110 , GLY B:111 , LYS B:427 , ADP B:1002 , MG B:2002 , HOH B:3003 , HOH B:3008 , HOH B:3089 , HOH B:3165
BINDING SITE FOR RESIDUE ALF B 3002
5
AC5
SOFTWARE
GLY A:266 , ASP A:267 , THR A:268 , THR A:269 , ARG A:307 , HOH A:4005 , ARG B:307
BINDING SITE FOR RESIDUE SO4 A 4001
6
AC6
SOFTWARE
ARG B:102 , THR B:418 , HOH B:3030 , HOH B:3069
BINDING SITE FOR RESIDUE MG B 2003
7
AC7
SOFTWARE
ASN A:42 , ALA A:46 , ASP A:76 , GLY A:80 , ILE A:81 , ALA A:89 , TYR A:95 , SER A:96 , SER A:97 , LYS A:98 , GLY A:106 , MET A:107 , TYR A:108 , GLY A:109 , LEU A:110 , GLY A:111 , VAL A:112 , LYS A:113 , MG A:2001 , ALF A:3001 , HOH A:4004 , HOH A:4009 , HOH A:4011 , HOH A:4012 , HOH A:4136 , PHE B:7
BINDING SITE FOR RESIDUE ADP A 1001
8
AC8
SOFTWARE
PHE A:7 , ASN B:42 , ALA B:46 , ASP B:76 , GLY B:80 , ILE B:81 , ALA B:89 , TYR B:95 , SER B:96 , SER B:97 , LYS B:98 , MET B:107 , TYR B:108 , GLY B:109 , LEU B:110 , GLY B:111 , VAL B:112 , LYS B:113 , THR B:170 , MG B:2002 , ALF B:3002 , HOH B:3007 , HOH B:3008 , HOH B:3010 , HOH B:3016 , HOH B:3165
BINDING SITE FOR RESIDUE ADP B 1002
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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Sorry, no Info available
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1z5ba1 (A:229-306)
1b: SCOP_d1z5bb1 (B:229-306)
2a: SCOP_d1z5ba3 (A:4-228)
2b: SCOP_d1z5bb3 (B:4-228)
3a: SCOP_d1z5ba2 (A:307-469)
3b: SCOP_d1z5bb2 (B:307-463)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
S13-like H2TH domain
(119)
Superfamily
:
S13-like H2TH domain
(119)
Family
:
Topoisomerase VI-B subunit middle domain
(7)
Protein domain
:
Topoisomerase VI-B subunit middle domain
(7)
Sulfolobus shibatae [TaxId: 2286]
(7)
1a
d1z5ba1
A:229-306
1b
d1z5bb1
B:229-306
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
(364)
Superfamily
:
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
(364)
Family
:
DNA gyrase/MutL, N-terminal domain
(28)
Protein domain
:
Topoisomerase VI-B subunit
(7)
Sulfolobus shibatae [TaxId: 2286]
(7)
2a
d1z5ba3
A:4-228
2b
d1z5bb3
B:4-228
Fold
:
Ribosomal protein S5 domain 2-like
(306)
Superfamily
:
Ribosomal protein S5 domain 2-like
(306)
Family
:
DNA gyrase/MutL, second domain
(21)
Protein domain
:
Topoisomerase VI-B subunit
(7)
Sulfolobus shibatae [TaxId: 2286]
(7)
3a
d1z5ba2
A:307-469
3b
d1z5bb2
B:307-463
[
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1z5bA01 (A:4-220)
1b: CATH_1z5bB01 (B:4-220)
2a: CATH_1z5bB03 (B:315-463)
2b: CATH_1z5bA03 (A:315-469)
3a: CATH_1z5bA02 (A:230-307)
3b: CATH_1z5bB02 (B:230-307)
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Organisms
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)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Heat Shock Protein 90
(209)
Homologous Superfamily
:
[code=3.30.565.10, no name defined]
(205)
Sulfolobus shibatae. Organism_taxid: 2286.
(7)
1a
1z5bA01
A:4-220
1b
1z5bB01
B:4-220
Topology
:
Ribosomal Protein S5; domain 2
(189)
Homologous Superfamily
:
[code=3.30.230.10, no name defined]
(170)
Sulfolobus shibatae. Organism_taxid: 2286.
(7)
2a
1z5bB03
B:315-463
2b
1z5bA03
A:315-469
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Helicase, Ruva Protein; domain 3
(218)
Homologous Superfamily
:
[code=1.10.8.50, no name defined]
(26)
Sulfolobus shibatae. Organism_taxid: 2286.
(7)
3a
1z5bA02
A:230-307
3b
1z5bB02
B:230-307
[
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_FbpA_1z5bB01 (B:220-313)
1b: PFAM_FbpA_1z5bB02 (B:220-313)
2a: PFAM_HATPase_c_1z5bB03 (B:28-177)
2b: PFAM_HATPase_c_1z5bB04 (B:28-177)
3a: PFAM_Topo_VIb_trans_1z5bB05 (B:309-463)
3b: PFAM_Topo_VIb_trans_1z5bB06 (B:309-463)
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Clans
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)
(
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Families
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)
(
)
Organisms
(
)
(
)
Clan
:
H2TH
(43)
Family
:
FbpA
(7)
Sulfolobus shibatae
(7)
1a
FbpA-1z5bB01
B:220-313
1b
FbpA-1z5bB02
B:220-313
Clan
:
His_Kinase_A
(147)
Family
:
HATPase_c
(132)
Sulfolobus shibatae
(7)
2a
HATPase_c-1z5bB03
B:28-177
2b
HATPase_c-1z5bB04
B:28-177
Clan
:
S5
(103)
Family
:
Topo-VIb_trans
(8)
Sulfolobus shibatae
(7)
3a
Topo-VIb_trans-1z5bB05
B:309-463
3b
Topo-VIb_trans-1z5bB06
B:309-463
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