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1Z05
Biol. Unit 1
Info
Asym.Unit (80 KB)
Biol.Unit 1 (147 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE ROK FAMILY TRANSCRIPTIONAL REGULATOR, HOMOLOG OF E.COLI MLC PROTEIN.
Authors
:
G. Minasov, J. S. Brunzelle, L. Shuvalova, F. R. Collart, W. F. Anderson Center For Structural Genomics (Mcsg)
Date
:
01 Mar 05 (Deposition) - 08 Mar 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Rok Family, Transcriptional Regulator, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Minasov, J. S. Brunzelle, L. Shuvalova, F. R. Collart, W. F. Anderso
Crystal Structure Of The Rok Family Transcriptional Regulator, Homolog Of E. Coli Mlc Protein.
To Be Published
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Hetero Components
(3, 16)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
2a: GLYCEROL (GOLa)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
4a: ZINC ION (ZNa)
View:
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No.
Name
Count
Type
Full Name
1
BME
2
Ligand/Ion
BETA-MERCAPTOETHANOL
2
GOL
2
Ligand/Ion
GLYCEROL
3
SO4
12
Ligand/Ion
SULFATE ION
4
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:245 , CYS A:255 , CYS A:257 , CYS A:262
BINDING SITE FOR RESIDUE ZN A 406
2
AC2
SOFTWARE
ARG A:90 , GLY A:92 , ARG A:93 , TYR A:95 , HIS A:219 , HIS A:220 , HOH A:521 , HOH A:735
BINDING SITE FOR RESIDUE SO4 A 407
3
AC3
SOFTWARE
ARG A:93 , HIS A:219 , HIS A:220 , GLY A:221 , HOH A:437 , HOH A:520 , HOH A:722 , HOH A:802
BINDING SITE FOR RESIDUE SO4 A 408
4
AC4
SOFTWARE
GLU A:355 , ILE A:358 , ARG A:359 , HIS A:367 , LEU A:370
BINDING SITE FOR RESIDUE SO4 A 409
5
AC5
SOFTWARE
PRO A:167 , HIS A:168 , HOH A:714 , HOH A:716 , HOH A:718 , HOH A:775
BINDING SITE FOR RESIDUE SO4 A 410
6
AC6
SOFTWARE
THR A:47 , ARG A:51 , HOH A:509 , HOH A:739
BINDING SITE FOR RESIDUE SO4 A 411
7
AC7
SOFTWARE
GLN A:316 , ARG A:319 , TYR A:320 , HOH A:776 , HOH A:777
BINDING SITE FOR RESIDUE SO4 A 412
8
AC8
SOFTWARE
GLN A:356 , CYS A:357 , GLU A:360 , HOH A:454 , HOH A:737 , HOH A:749 , HOH A:750
BINDING SITE FOR RESIDUE BME A 413
9
AC9
SOFTWARE
GLN A:345 , ALA A:346 , LYS A:347 , SER A:348 , HOH A:772 , HOH A:785 , HOH A:792
BINDING SITE FOR RESIDUE GOL A 414
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d1z05a1 (A:10-80)
2a: SCOP_d1z05a2 (A:209-405)
2b: SCOP_d1z05a3 (A:81-208)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
ROK associated domain
(4)
Protein domain
:
Transcriptional regulator VC2007 N-terminal domain
(1)
Vibrio cholerae [TaxId: 666]
(1)
1a
d1z05a1
A:10-80
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
ROK
(11)
Protein domain
:
Transcriptional regulator VC2007
(1)
Vibrio cholerae [TaxId: 666]
(1)
2a
d1z05a2
A:209-405
2b
d1z05a3
A:81-208
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_1z05A02 (A:82-207,A:378-405)
1b: CATH_1z05A03 (A:208-377)
2a: CATH_1z05A01 (A:10-81)
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.40, no name defined]
(217)
N16961 (Vibrio cholerae o1 biovar eltor str)
(1)
1a
1z05A02
A:82-207,A:378-405
1b
1z05A03
A:208-377
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
N16961 (Vibrio cholerae o1 biovar eltor str)
(1)
2a
1z05A01
A:10-81
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_ROK_1z05A01 (A:88-272)
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Clan
:
Actin_ATPase
(173)
Family
:
ROK
(9)
Vibrio cholerae
(1)
1a
ROK-1z05A01
A:88-272
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