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1YTZ
Asym. Unit
Info
Asym.Unit (75 KB)
Biol.Unit 1 (68 KB)
Biol.Unit 2 (134 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SKELETAL MUSCLE TROPONIN IN THE CA2+-ACTIVATED STATE
Authors
:
M. V. Vinogradova, D. B. Stone, G. G. Malanina, C. Karatzaferi, R. Cooke, R. A. Mendelson, R. J. Fletterick
Date
:
11 Feb 05 (Deposition) - 12 Apr 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : C,I,T
Biol. Unit 1: C,I,T (1x)
Biol. Unit 2: C,I,T (2x)
Keywords
:
Troponin, Muscle, Thin Filament, Actin Binding, Calcium, Contractile Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. V. Vinogradova, D. B. Stone, G. G. Malanina, C. Karatzaferi, R. Cooke, R. A. Mendelson, R. J. Fletterick
Ca2+-Regulated Structural Changes In Troponin
Proc. Natl. Acad. Sci. Usa V. 102 5038 2005
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: ALPHA-[4-(1,1,3,3 - TETRAMETHYLBUT... (DR6a)
2b: ALPHA-[4-(1,1,3,3 - TETRAMETHYLBUT... (DR6b)
2c: ALPHA-[4-(1,1,3,3 - TETRAMETHYLBUT... (DR6c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
DR6
3
Ligand/Ion
ALPHA-[4-(1,1,3,3 - TETRAMETHYLBUTYL)PHENYL]-OMEGA-HYDROXY-POLY(OXY-1,2-ETHANEDIYL)
[
close Hetero Component info
]
Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP C:105 , ASN C:107 , ASP C:109 , PHE C:111 , GLU C:116
BINDING SITE FOR RESIDUE CA C 201
2
AC2
SOFTWARE
ASP C:141 , ASN C:143 , ASP C:145 , ARG C:147 , GLU C:152
BINDING SITE FOR RESIDUE CA C 202
3
AC3
SOFTWARE
ASP C:29 , ASP C:31 , ASP C:35 , GLU C:40
BINDING SITE FOR RESIDUE CA C 203
4
AC4
SOFTWARE
ASP C:65 , ASP C:67 , SER C:69 , THR C:71 , ASP C:73 , GLU C:76
BINDING SITE FOR RESIDUE CA C 204
5
AC5
SOFTWARE
MET C:45 , LEU C:48 , GLY C:49 , GLN C:50 , MET C:81 , GLN C:84 , ARG I:115 , MET I:116 , MET I:121
BINDING SITE FOR RESIDUE DR6 C 205
6
AC6
SOFTWARE
TYR I:43 , HIS I:47 , LYS I:66 , LYS T:220
BINDING SITE FOR RESIDUE DR6 I 183
7
AC7
SOFTWARE
LYS T:183 , LYS T:190 , ASN T:193 , ILE T:194 , GLU T:208
BINDING SITE FOR RESIDUE DR6 T 103
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (C:16-51|C:52-87|C:92-127|C:128-161)
2: EF_HAND_1 (C:29-41|C:65-77|C:105-117|C:141-15...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
TNNC2_CHICK
18-53
54-89
94-129
130-163
4
C:16-51
C:52-87
C:92-127
C:128-161
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
TNNC2_CHICK
31-43
67-79
107-119
143-155
4
C:29-41
C:65-77
C:105-117
C:141-153
[
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]
Exons
(4, 4)
Info
All Exons
Exon 1.1 (C:3-48)
Exon 1.2 (C:48-86)
Exon 1.3 (C:86-132)
Exon 1.4 (C:132-141)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSGALT00000011060
1
ENSGALE00000073521
Un_random:20732110-20732258
149
TNNC2_CHICK
1-50
50
1
C:3-48
46
1.2
ENSGALT00000011060
2
ENSGALE00000073519
Un_random:20732332-20732446
115
TNNC2_CHICK
50-88
39
1
C:48-86
39
1.3
ENSGALT00000011060
3
ENSGALE00000073522
Un_random:20732522-20732658
137
TNNC2_CHICK
88-134
47
1
C:86-132
47
1.4
ENSGALT00000011060
4
ENSGALE00000073520
Un_random:20732749-20732979
231
TNNC2_CHICK
134-143
10
1
C:132-141
10
[
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]
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d1ytzc_ (C:)
2a: SCOP_d1ytzi1 (I:3-143)
3a: SCOP_d1ytzt1 (T:159-248)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Calmodulin-like
(356)
Protein domain
:
Troponin C
(53)
Chicken (Gallus gallus) [TaxId: 9031]
(28)
1a
d1ytzc_
C:
Class
:
Coiled coil proteins
(689)
Fold
:
Parallel coiled-coil
(407)
Superfamily
:
Troponin coil-coiled subunits
(8)
Family
:
Troponin I
(4)
Protein domain
:
Troponin I
(4)
Chicken (Gallus gallus) [TaxId: 9031]
(2)
2a
d1ytzi1
I:3-143
Family
:
Troponin T
(4)
Protein domain
:
Troponin T
(4)
Chicken (Gallus gallus) [TaxId: 9031]
(2)
3a
d1ytzt1
T:159-248
[
close SCOP info
]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1ytzC01 (C:3-89)
1b: CATH_1ytzC02 (C:90-161)
2a: CATH_1ytzI01 (I:3-127)
2b: CATH_1ytzT00 (T:159-248)
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)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Chicken (Gallus gallus)
(34)
1a
1ytzC01
C:3-89
1b
1ytzC02
C:90-161
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.350, no name defined]
(3)
Chicken (Gallus gallus)
(1)
2a
1ytzI01
I:3-127
2b
1ytzT00
T:159-248
[
close CATH info
]
Pfam Domains
(4, 6)
Info
all PFAM domains
1a: PFAM_EF_hand_5_1ytzC01 (C:13-81)
2a: PFAM_EF_hand_6_1ytzC02 (C:32-84)
3a: PFAM_efhand_1ytzC03 (C:132-160)
3b: PFAM_efhand_1ytzC04 (C:132-160)
4a: PFAM_Troponin_1ytzI01 (I:14-143)
4b: PFAM_Troponin_1ytzT01 (T:159-210)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
EF_hand
(270)
Family
:
EF_hand_5
(126)
Gallus gallus (Chicken)
(32)
1a
EF_hand_5-1ytzC01
C:13-81
Family
:
EF_hand_6
(75)
Gallus gallus (Chicken)
(14)
2a
EF_hand_6-1ytzC02
C:32-84
Family
:
efhand
(70)
Gallus gallus (Chicken)
(11)
3a
efhand-1ytzC03
C:132-160
3b
efhand-1ytzC04
C:132-160
Clan
:
no clan defined [family: Troponin]
(10)
Family
:
Troponin
(10)
Gallus gallus (Chicken)
(4)
4a
Troponin-1ytzI01
I:14-143
4b
Troponin-1ytzT01
T:159-210
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Chain T
Asymmetric Unit 1
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