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1YTQ
Asym. Unit
Info
Asym.Unit (39 KB)
Biol.Unit 1 (35 KB)
Biol.Unit 2 (68 KB)
Biol.Unit 3 (135 KB)
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(1)
Title
:
STRUCTURE OF NATIVE HUMAN BETA B2 CRYSTALLIN
Authors
:
C. Slingsby, M. A. Smith, O. A. Bateman
Date
:
10 Feb 05 (Deposition) - 31 Jan 06 (Release) - 26 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Biol. Unit 3: A (4x)
Keywords
:
Crystallin, Domain Swapping, Greek Key, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. A. Smith, O. A. Bateman, R. Jaenicke, C. Slingsby
Mutation Of Interfaces In Domain-Swapped Human Betab2-Crystallin
Protein Sci. V. 16 615 2007
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_038431 (A64S, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_038431
A
65
S
CRBB2_HUMAN
Polymorphism
16986560
A
A
64
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: CRYSTALLIN_BETA_GAMMA (A:16-55|A:56-100|A:106-147|A:148-1...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CRYSTALLIN_BETA_GAMMA
PS50915
Crystallins beta and gamma 'Greek key' motif profile.
CRBB2_HUMAN
17-56
57-101
107-148
149-191
4
A:16-55
A:56-100
A:106-147
A:148-190
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Exons
(5, 5)
Info
All Exons
Exon 1.2a (A:14-17)
Exon 1.3 (A:18-57)
Exon 1.4 (A:57-101)
Exon 1.5 (A:102-149)
Exon 1.6b (A:149-194)
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All Exon Boundaries
1: Boundary 1.1/1.2a
2: Boundary 1.2a/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6b
6: Boundary 1.6b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000398215
1
ENSE00001532164
chr22:
25615489-25615633
145
CRBB2_HUMAN
-
0
0
-
-
1.2a
ENST00000398215
2a
ENSE00001532163
chr22:
25617371-25617450
80
CRBB2_HUMAN
1-18
18
1
A:14-17
4
1.3
ENST00000398215
3
ENSE00000651772
chr22:
25620885-25621003
119
CRBB2_HUMAN
19-58
40
1
A:18-57
40
1.4
ENST00000398215
4
ENSE00000651773
chr22:
25623820-25623952
133
CRBB2_HUMAN
58-102
45
1
A:57-101
45
1.5
ENST00000398215
5
ENSE00000651774
chr22:
25625403-25625545
143
CRBB2_HUMAN
103-150
48
1
A:102-149
48
1.6b
ENST00000398215
6b
ENSE00001725060
chr22:
25627571-25627836
266
CRBB2_HUMAN
150-205
56
1
A:149-194
46
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1ytqa1 (A:14-102)
1b: SCOP_d1ytqa2 (A:103-194)
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Protein Domains
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(
)
Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
gamma-Crystallin-like
(65)
Superfamily
:
gamma-Crystallin-like
(65)
Family
:
Crystallins/Ca-binding development proteins
(34)
Protein domain
:
beta-Crystallin
(11)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1ytqa1
A:14-102
1b
d1ytqa2
A:103-194
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1ytqA02 (A:102-193)
1b: CATH_1ytqA01 (A:16-101)
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Gamma-B Crystallin; domain 1
(45)
Homologous Superfamily
:
Crystallins
(39)
Human (Homo sapiens)
(7)
1a
1ytqA02
A:102-193
1b
1ytqA01
A:16-101
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Crystall_1ytqA01 (A:107-189)
1b: PFAM_Crystall_1ytqA02 (A:107-189)
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Clan
:
gCrystallin
(22)
Family
:
Crystall
(21)
Homo sapiens (Human)
(8)
1a
Crystall-1ytqA01
A:107-189
1b
Crystall-1ytqA02
A:107-189
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Asym.Unit (39 KB)
Header - Asym.Unit
Biol.Unit 1 (35 KB)
Header - Biol.Unit 1
Biol.Unit 2 (68 KB)
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Biol.Unit 3 (135 KB)
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