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1YRO
Biol. Unit 1
Info
Asym.Unit (157 KB)
Biol.Unit 1 (77 KB)
Biol.Unit 2 (77 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BETA14,-GALACTOSYLTRANSFERASE MUTANT ARG228LYS IN COMPLEX WITH ALPHA-LACTALBUMIN IN THE PRESENCE OF UDP-GALACTOSE AND MN
Authors
:
B. Ramakrishnan, E. Boeggeman, P. K. Qasba
Date
:
04 Feb 05 (Deposition) - 22 Mar 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Arg228Lys Mutation; Udp-Gal Complex, Transferase Activator/Transferase Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Ramakrishnan, E. Boeggeman, P. K. Qasba
Mutation Of Arginine 228 To Lysine Enhances The Glucosyltransferase Activity Of Bovine Beta-1, 4-Galactosyltransferase I
Biochemistry V. 44 3202 2005
(for further references see the
PDB file header
)
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Hetero Components
(4, 4)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: GALACTOSE-URIDINE-5'-DIPHOSPHATE (GDUa)
2b: GALACTOSE-URIDINE-5'-DIPHOSPHATE (GDUb)
3a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
4a: MANGANESE (II) ION (MNa)
4b: MANGANESE (II) ION (MNb)
5a: TETRAETHYLENE GLYCOL (PG4a)
5b: TETRAETHYLENE GLYCOL (PG4b)
6a: URIDINE-5'-DIPHOSPHATE (UDPa)
6b: URIDINE-5'-DIPHOSPHATE (UDPb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
GDU
1
Ligand/Ion
GALACTOSE-URIDINE-5'-DIPHOSPHATE
3
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4
MN
-1
Ligand/Ion
MANGANESE (II) ION
5
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
6
UDP
1
Ligand/Ion
URIDINE-5'-DIPHOSPHATE
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC7 (SOFTWARE)
5: AC9 (SOFTWARE)
6: BC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:1139 , PRO B:187 , PHE B:188 , ARG B:189 , ARG B:191 , PHE B:226 , LYS B:228 , ASP B:252 , VAL B:253 , ASP B:254 , LYS B:279 , GLY B:292 , TRP B:314 , GLY B:315 , GLU B:317 , ASP B:318 , MET B:344 , HIS B:347 , ARG B:349 , ASP B:350 , MN B:404 , HOH B:909 , HOH B:915 , HOH B:958 , HOH B:964 , HOH B:1036 , HOH B:1122 , HOH B:1166
BINDING SITE FOR RESIDUE GDU B 403
2
AC3
SOFTWARE
LYS A:79 , ASP A:82 , GLU A:84 , ASP A:87 , ASP A:88 , HOH A:905 , HOH A:942
BINDING SITE FOR RESIDUE CA A 124
3
AC5
SOFTWARE
ASP B:254 , MET B:344 , HIS B:347 , GDU B:403 , HOH B:909
BINDING SITE FOR RESIDUE MN B 404
4
AC7
SOFTWARE
LEU B:155 , GLU B:159 , GLN B:192 , TYR B:388 , PRO B:389 , LEU B:390 , TYR B:391 , LYS B:393 , HOH B:1199 , HOH B:1597
BINDING SITE FOR RESIDUE UDP B 405
5
AC9
SOFTWARE
GLU A:49 , GLN A:54 , LYS A:99 , TYR A:103 , HOH A:930 , HOH A:1506
BINDING SITE FOR RESIDUE MES A 805
6
BC1
SOFTWARE
PHE A:31 , THR A:33 , SER A:34 , GLY A:35 , HOH A:1139 , HOH A:1149 , HOH A:1302 , HOH A:1320 , HOH A:1502 , PHE B:280 , TRP B:314
BINDING SITE FOR RESIDUE PG4 A 806
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: LACTALBUMIN_LYSOZYME_2 (A:1-123)
2: LACTALBUMIN_LYSOZYME_1 (A:73-91)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LACTALBUMIN_LYSOZYME_2
PS51348
Alpha-lactalbumin / lysozyme C family profile.
LALBA_MOUSE
21-143
1
A:1-123
-
2
LACTALBUMIN_LYSOZYME_1
PS00128
Alpha-lactalbumin / lysozyme C signature.
LALBA_MOUSE
93-111
1
A:73-91
-
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1yroa_ (A:)
1b: SCOP_d1yroc_ (C:)
2a: SCOP_d1yrob1 (B:131-402)
2b: SCOP_d1yrod_ (D:)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Lysozyme-like
(1361)
Superfamily
:
Lysozyme-like
(1361)
Family
:
C-type lysozyme
(738)
Protein domain
:
alpha-Lactalbumin
(25)
Mouse (Mus musculus) [TaxId: 10090]
(12)
1a
d1yroa_
A:
1b
d1yroc_
C:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
beta 1,4 galactosyltransferase (b4GalT1)
(39)
Protein domain
:
beta 1,4 galactosyltransferase (b4GalT1)
(20)
Cow (Bos taurus) [TaxId: 9913]
(20)
2a
d1yrob1
B:131-402
2b
d1yrod_
D:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1yroB00 (B:131-402)
1b: CATH_1yroD00 (D:131-402)
2a: CATH_1yroA00 (A:1-123)
2b: CATH_1yroC00 (C:1-123)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Homologous Superfamily
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
House mouse (Mus musculus)
(18)
1a
1yroB00
B:131-402
1b
1yroD00
D:131-402
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Lysozyme
(1131)
Homologous Superfamily
:
[code=1.10.530.10, no name defined]
(605)
House mouse (Mus musculus)
(61)
2a
1yroA00
A:1-123
2b
1yroC00
C:1-123
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Glyco_transf_7C_1yroD01 (D:271-350)
1b: PFAM_Glyco_transf_7C_1yroD02 (D:271-350)
2a: PFAM_Glyco_transf_7N_1yroD03 (D:134-269)
2b: PFAM_Glyco_transf_7N_1yroD04 (D:134-269)
3a: PFAM_Lys_1yroC01 (C:1-120)
3b: PFAM_Lys_1yroC02 (C:1-120)
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)
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Organisms
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)
(
)
Clan
:
GT-A
(172)
Family
:
Glyco_transf_7C
(16)
Bos taurus (Bovine)
(15)
1a
Glyco_transf_7C-1yroD01
D:271-350
1b
Glyco_transf_7C-1yroD02
D:271-350
Family
:
Glyco_transf_7N
(16)
Bos taurus (Bovine)
(15)
2a
Glyco_transf_7N-1yroD03
D:134-269
2b
Glyco_transf_7N-1yroD04
D:134-269
Clan
:
Lysozyme
(266)
Family
:
Lys
(245)
Mus musculus (Mouse)
(10)
3a
Lys-1yroC01
C:1-120
3b
Lys-1yroC02
C:1-120
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Asym.Unit (157 KB)
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Header - Biol.Unit 1
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