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1YNT
Asym. Unit
Info
Asym.Unit (226 KB)
Biol.Unit 1 (221 KB)
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(1)
Title
:
STRUCTURE OF THE IMMUNODOMINANT EPITOPE DISPLAYED BY THE SURFACE ANTIGEN 1 (SAG1) OF TOXOPLASMA GONDII COMPLEXED TO A MONOCLONAL ANTIBODY
Authors
:
M. Graille, E. A. Stura, M. Bossus, B. H. Muller, O. Letourneur, N Batta Poirot, G. Sibai, D. Rolland, M. H. Le Du, F. Ducancel
Date
:
25 Jan 05 (Deposition) - 27 Dec 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G
Biol. Unit 1: A,B,C,D,E,F,G (1x)
Keywords
:
Toxoplasma Gondii, Recombinant Sag1, Conformational Epitope, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Graille, E. A. Stura, M. Bossus, B. H. Muller, O. Letourneur, N. Battail-Poirot, G. Sibai, M. Gauthier, D. Rolland, M. H. Le Du, F. Ducancel
Crystal Structure Of The Complex Between The Monomeric Form Of Toxoplasma Gondii Surface Antigen 1 (Sag1) And A Monoclonal Antibody That Mimics The Human Immune Response
J. Mol. Biol. V. 354 447 2005
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CD
2
Ligand/Ion
CADMIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER B:665
BINDING SITE FOR RESIDUE CD B 4001
2
AC2
SOFTWARE
SER D:1665
BINDING SITE FOR RESIDUE CD D 4002
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(5, 11)
Info
All SCOP Domains
1a: SCOP_d1yntf1 (F:2003-2131)
1b: SCOP_d1yntf2 (F:2132-2254)
1c: SCOP_d1yntg1 (G:3003-3131)
1d: SCOP_d1yntg2 (G:3132-3254)
2a: SCOP_d1ynta1 (A:1-107)
2b: SCOP_d1yntc1 (C:1001-1107)
3a: SCOP_d1ynta2 (A:108-213)
3b: SCOP_d1yntc2 (C:1108-1213)
4a: SCOP_d1yntb1 (B:619-718)
4b: SCOP_d1yntd1 (D:1619-1718)
5a: SCOP_d1ynte_ (E:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Major surface antigen p30, SAG1
(2)
Family
:
Major surface antigen p30, SAG1
(2)
Protein domain
:
automated matches
(1)
Toxoplasma gondii [TaxId: 5811]
(1)
1a
d1yntf1
F:2003-2131
1b
d1yntf2
F:2132-2254
1c
d1yntg1
G:3003-3131
1d
d1yntg2
G:3132-3254
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Mouse (Mus musculus) [TaxId: 10090]
(360)
2a
d1ynta1
A:1-107
2b
d1yntc1
C:1001-1107
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Mouse (Mus musculus) [TaxId: 10090]
(309)
3a
d1ynta2
A:108-213
3b
d1yntc2
C:1108-1213
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Mouse (Mus musculus) [TaxId: 10090]
(414)
4a
d1yntb1
B:619-718
4b
d1yntd1
D:1619-1718
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Immunoglobulin-binding domains
(65)
Family
:
Immunoglobulin-binding domains
(65)
Protein domain
:
Immunoglobulin light chain-binding domain of protein L
(12)
Peptostreptococcus magnus [TaxId: 1260]
(12)
5a
d1ynte_
E:
[
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CATH Domains
(3, 13)
Info
all CATH domains
1a: CATH_1yntE00 (E:820-880)
2a: CATH_1yntF02 (F:2132-2254)
2b: CATH_1yntG02 (G:3132-3254)
2c: CATH_1yntF01 (F:2003-2131)
2d: CATH_1yntG01 (G:3003-3131)
3a: CATH_1yntA02 (A:108-211)
3b: CATH_1yntB02 (B:619-718)
3c: CATH_1yntD02 (D:1619-1718)
3d: CATH_1yntB01 (B:501-618)
3e: CATH_1yntD01 (D:1501-1618)
3f: CATH_1yntC02 (C:1108-1211)
3g: CATH_1yntA01 (A:1-107)
3h: CATH_1yntC01 (C:1001-1107)
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
[code=3.10.20.10, no name defined]
(72)
House mouse (Mus musculus)
(6)
1a
1yntE00
E:820-880
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.1320, no name defined]
(2)
House mouse (Mus musculus)
(1)
2a
1yntF02
F:2132-2254
2b
1yntG02
G:3132-3254
2c
1yntF01
F:2003-2131
2d
1yntG01
G:3003-3131
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
3a
1yntA02
A:108-211
3b
1yntB02
B:619-718
3c
1yntD02
D:1619-1718
3d
1yntB01
B:501-618
3e
1yntD01
D:1501-1618
3f
1yntC02
C:1108-1211
3g
1yntA01
A:1-107
3h
1yntC01
C:1001-1107
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_SAG_1yntG01 (G:3136-3253)
1b: PFAM_SAG_1yntG02 (G:3136-3253)
1c: PFAM_SAG_1yntG03 (G:3136-3253)
1d: PFAM_SAG_1yntG04 (G:3136-3253)
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)
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Clan
:
no clan defined [family: SAG]
(5)
Family
:
SAG
(5)
Toxoplasma gondii
(5)
1a
SAG-1yntG01
G:3136-3253
1b
SAG-1yntG02
G:3136-3253
1c
SAG-1yntG03
G:3136-3253
1d
SAG-1yntG04
G:3136-3253
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Asymmetric Unit 1
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Asym.Unit (226 KB)
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