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1YA3
Asym. Unit
Info
Asym.Unit (123 KB)
Biol.Unit 1 (41 KB)
Biol.Unit 2 (40 KB)
Biol.Unit 3 (41 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN MINERALOCORTICOID RECEPTOR LIGAND-BINDING DOMAIN BOUND TO PROGESTERONE AND HARBORING THE S810L MUTATION RESPONSIBLE FOR A SEVERE FORM OF HYPERTENSION
Authors
:
J. Fagart, J. Huyet, G. M. Pinon, M. Rochel, C. Mayer, M. E. Rafestin- Oblin
Date
:
17 Dec 04 (Deposition) - 24 May 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.34
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Mineralocorticoid Receptor, Steroid Receptor, Nuclear Receptor Transcription Regulation, Activating Mutation, Hypertension
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Fagart, J. Huyet, G. M. Pinon, M. Rochel, C. Mayer, M. E. Rafestin-Oblin
Crystal Structure Of A Mutant Mineralocorticoid Receptor Responsible For Hypertension
Nat. Struct. Mol. Biol. V. 12 554 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: PROGESTERONE (STRa)
1b: PROGESTERONE (STRb)
1c: PROGESTERONE (STRc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
STR
3
Ligand/Ion
PROGESTERONE
[
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]
Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:766 , LEU A:769 , ASN A:770 , GLN A:776 , LEU A:810 , ARG A:817 , PHE A:829 , MET A:845 , PHE A:941 , CYS A:942
BINDING SITE FOR RESIDUE STR A 1001
2
AC2
SOFTWARE
LEU B:766 , LEU B:769 , ASN B:770 , GLN B:776 , MET B:807 , LEU B:810 , LEU B:814 , ARG B:817 , PHE B:941 , CYS B:942 , THR B:945
BINDING SITE FOR RESIDUE STR B 2001
3
AC3
SOFTWARE
LEU C:766 , LEU C:769 , ASN C:770 , ALA C:773 , GLN C:776 , MET C:807 , LEU C:810 , ARG C:817 , PHE C:829 , MET C:845 , PHE C:941 , CYS C:942 , THR C:945 , HOH C:4035
BINDING SITE FOR RESIDUE STR C 3001
[
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SAPs(SNPs)/Variants
(11, 33)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_031272 (L769P, chain A/B/C, )
02: VAR_031273 (N770K, chain A/B/C, )
03: VAR_031274 (Q776R, chain A/B/C, )
04: VAR_031275 (S805P, chain A/B/C, )
05: VAR_015626 (L810L, chain A/B/C, )
06: VAR_031276 (S815R, chain A/B/C, )
07: VAR_031277 (S818L, chain A/B/C, )
08: VAR_029311 (F826Y, chain A/B/C, )
09: VAR_015627 (L924P, chain A/B/C, )
10: VAR_031278 (E972G, chain A/B/C, )
11: VAR_031279 (L979P, chain A/B/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_031272
L
769
P
MCR_HUMAN
Disease (PHA1A)
---
A/B/C
L
769
P
02
UniProt
VAR_031273
N
770
K
MCR_HUMAN
Disease (PHA1A)
---
A/B/C
N
770
K
03
UniProt
VAR_031274
Q
776
R
MCR_HUMAN
Disease (PHA1A)
---
A/B/C
Q
776
R
04
UniProt
VAR_031275
S
805
P
MCR_HUMAN
Disease (PHA1A)
---
A/B/C
S
805
P
05
UniProt
VAR_015626
S
810
L
MCR_HUMAN
Disease (EOHSEP)
41511344
A/B/C
L
810
L
06
UniProt
VAR_031276
S
815
R
MCR_HUMAN
Disease (PHA1A)
---
A/B/C
S
815
R
07
UniProt
VAR_031277
S
818
L
MCR_HUMAN
Disease (PHA1A)
---
A/B/C
S
818
L
08
UniProt
VAR_029311
F
826
Y
MCR_HUMAN
Polymorphism
13306592
A/B/C
F
826
Y
09
UniProt
VAR_015627
L
924
P
MCR_HUMAN
Disease (PHA1A)
---
A/B/C
L
924
P
10
UniProt
VAR_031278
E
972
G
MCR_HUMAN
Disease (PHA1A)
---
A/B/C
E
972
G
11
UniProt
VAR_031279
L
979
P
MCR_HUMAN
Disease (PHA1A)
---
A/B/C
L
979
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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Exons
(5, 15)
Info
All Exons
Exon 1.8a (A:737-789 (gaps) | B:738-789 (gaps...)
Exon 1.9a (A:789-837 | B:789-837 | C:789-837)
Exon 1.11 (A:837-881 | B:837-881 | C:837-881)
Exon 1.12 (A:881-933 (gaps) | B:881-933 (gaps...)
Exon 1.13d (A:934-982 | B:934-982 | C:934-982)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.7b/1.8a
2: Boundary 1.8a/1.9a
3: Boundary 1.9a/1.11
4: Boundary 1.11/1.12
5: Boundary 1.12/1.13d
6: Boundary 1.13d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000358102
2a
ENSE00002056278
chr4:
149363672-149363312
361
MCR_HUMAN
-
0
0
-
-
1.3a
ENST00000358102
3a
ENSE00001221601
chr4:
149358014-149356256
1759
MCR_HUMAN
1-586
586
0
-
-
1.5a
ENST00000358102
5a
ENSE00001221249
chr4:
149181269-149181130
140
MCR_HUMAN
586-633
48
0
-
-
1.7b
ENST00000358102
7b
ENSE00001641416
chr4:
149116013-149115897
117
MCR_HUMAN
633-672
40
0
-
-
1.8a
ENST00000358102
8a
ENSE00001221232
chr4:
149076052-149075702
351
MCR_HUMAN
672-789
118
3
A:737-789 (gaps)
B:738-789 (gaps)
C:737-789 (gaps)
53
52
53
1.9a
ENST00000358102
9a
ENSE00001000702
chr4:
149073764-149073620
145
MCR_HUMAN
789-837
49
3
A:789-837
B:789-837
C:789-837
49
49
49
1.11
ENST00000358102
11
ENSE00001771423
chr4:
149041439-149041309
131
MCR_HUMAN
837-881
45
3
A:837-881
B:837-881
C:837-881
45
45
45
1.12
ENST00000358102
12
ENSE00001739163
chr4:
149035412-149035255
158
MCR_HUMAN
881-933
53
3
A:881-933 (gaps)
B:881-933 (gaps)
C:881-933 (gaps)
53
53
53
1.13d
ENST00000358102
13d
ENSE00002035974
chr4:
149002650-148999920
2731
MCR_HUMAN
934-984
51
3
A:934-982
B:934-982
C:934-982
49
49
49
[
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]
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1ya3a_ (A:)
1b: SCOP_d1ya3b_ (B:)
1c: SCOP_d1ya3c_ (C:)
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(
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Organisms
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
automated matches
(140)
Human (Homo sapiens) [TaxId: 9606]
(122)
1a
d1ya3a_
A:
1b
d1ya3b_
B:
1c
d1ya3c_
C:
[
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1ya3A00 (A:737-982)
1b: CATH_1ya3C00 (C:737-982)
1c: CATH_1ya3B00 (B:738-982)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Retinoid X Receptor
(409)
Homologous Superfamily
:
Retinoid X Receptor
(409)
Human (Homo sapiens)
(337)
1a
1ya3A00
A:737-982
1b
1ya3C00
C:737-982
1c
1ya3B00
B:738-982
[
close CATH info
]
Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_Hormone_recep_1ya3C01 (C:750-960)
1b: PFAM_Hormone_recep_1ya3C02 (C:750-960)
1c: PFAM_Hormone_recep_1ya3C03 (C:750-960)
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Clan
:
no clan defined [family: Hormone_recep]
(290)
Family
:
Hormone_recep
(290)
Homo sapiens (Human)
(244)
1a
Hormone_recep-1ya3C01
C:750-960
1b
Hormone_recep-1ya3C02
C:750-960
1c
Hormone_recep-1ya3C03
C:750-960
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