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1Y7Q
Asym. Unit
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Asym.Unit (1.1 MB)
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Models
(20 )
Title
:
MAMMALIAN SCAN DOMAIN DIMER IS A DOMAIN-SWAPPED HOMOLOGUE OF THE HIV CAPSID C-TERMINAL DOMAIN
Authors
:
D. Ivanov, J. R. Stone, J. L. Maki, T. Collins, G. Wagner
Date
:
09 Dec 04 (Deposition) - 18 Jan 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (20 x)
Keywords
:
Scan Domain; Retroviral Capsid C-Terminal Domain; Dimer; C2H2 Zinc Finger Associated, Transcription
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Ivanov, J. R. Stone, J. L. Maki, T. Collins, G. Wagner
Mammalian Scan Domain Dimer Is A Domain-Swapped Homolog Of The Hiv Capsid C-Terminal Domain
Mol. Cell V. 17 137 2005
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
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PROSITE Patterns/Profiles
(1, 2)
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1: SCAN_BOX (A:46-126,B:46-126)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SCAN_BOX
PS50804
SCAN box profile.
ZN174_HUMAN
46-126
2
A:46-126
B:46-126
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Exons
(1, 2)
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Exon 1.1b (A:35-132 (gaps) | B:35-132 (gaps))
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1: Boundary -/1.1b
2: Boundary 1.1b/1.2
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000268655
1b
ENSE00001838202
chr16:
3451420-3452406
987
ZN174_HUMAN
1-134
134
2
A:35-132 (gaps)
B:35-132 (gaps)
101
101
1.2
ENST00000268655
2
ENSE00000666898
chr16:
3454426-3454648
223
ZN174_HUMAN
135-209
75
0
-
-
1.4
ENST00000268655
4
ENSE00000666899
chr16:
3458321-3459370
1050
ZN174_HUMAN
209-407
199
0
-
-
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SCOP Domains
(1, 2)
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1a: SCOP_d1y7qa1 (A:37-132)
1b: SCOP_d1y7qb_ (B:)
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Class
:
All alpha proteins
(14657)
Fold
:
Acyl carrier protein-like
(148)
Superfamily
:
Retrovirus capsid dimerization domain-like
(45)
Family
:
SCAN domain
(2)
Protein domain
:
Zinc finger protein 174
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1y7qa1
A:37-132
1b
d1y7qb_
B:
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Pfam Domains
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1a: PFAM_SCAN_1y7qB01 (B:40-132)
1b: PFAM_SCAN_1y7qB02 (B:40-132)
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Clan
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no clan defined [family: SCAN]
(1)
Family
:
SCAN
(1)
Homo sapiens (Human)
(1)
1a
SCAN-1y7qB01
B:40-132
1b
SCAN-1y7qB02
B:40-132
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