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Theor. Model
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Theoretical Model (57 KB)
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(1)
Title
:
THEORETICAL MODEL OF THE LIGAND-BINDING REGION OF LUTROPIN RECEPTOR COMPLEXED WITH HUMAN CHORIONIC GONADOTROPIN
Authors
:
X. Jiang, M. Dreano, D. R. Buckler, S. Cheng, A. Ythier, H. Wu, W. A. Hendrickson, N. El Tayar
Date
:
27 Dec 96 (Deposition) - 15 May 97 (Release) - 15 May 97 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A,B,C
Keywords
:
Complex (Hormone/Receptor), Glycoprotein Hormone Receptor, Glycoprotein, Phosphorylation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Jiang, M. Dreano, D. R. Buckler, S. Cheng, A. Ythier, H. Wu, W. A. Hendrickson, N. El Tayar
Structural Predictions For The Ligand-Binding Region Of Glycoprotein Hormone Receptors And The Nature Of Hormone-Receptor Interactions Structure
Structure (London) V. 3 1341 1996
(for further references see the
PDB file header
)
[
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]
Hetero Components
(1, 2)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(9, 9)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_014586 (K2R, chain B, )
2: VAR_015232 (P4M, chain B, )
3: VAR_015233 (R8W, chain B, )
4: VAR_015234 (R10H, chain B, )
5: VAR_014587 (T15I, chain B, )
6: VAR_014588 (N77D, chain B, )
7: VAR_010154 (C131R, chain C, )
8: VAR_062336 (V144F, chain C, )
9: VAR_062337 (I152T, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014586
K
22
R
CGHB_HUMAN
Polymorphism
6518
B
K
2
R
2
UniProt
VAR_015232
P
24
M
CGHB_HUMAN
Unclassified
---
B
P
4
M
3
UniProt
VAR_015233
R
28
W
CGHB_HUMAN
Polymorphism
---
B
R
8
W
4
UniProt
VAR_015234
R
30
H
CGHB_HUMAN
Polymorphism
---
B
R
10
H
5
UniProt
VAR_014587
T
35
I
CGHB_HUMAN
Polymorphism
6515
B
T
15
I
6
UniProt
VAR_014588
N
97
D
CGHB_HUMAN
Polymorphism
6519
B
N
77
D
7
UniProt
VAR_010154
C
131
R
LSHR_HUMAN
Disease (LHR)
---
C
C
131
R
8
UniProt
VAR_062336
V
144
F
LSHR_HUMAN
Disease (LHR)
121912539
C
V
144
F
9
UniProt
VAR_062337
I
152
T
LSHR_HUMAN
Disease (LHR)
---
C
I
152
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(5, 5)
Info
All PROSITE Patterns/Profiles
1: GLYCO_HORMONE_ALPHA_3 (A:7-89)
2: GLYCO_HORMONE_ALPHA_1 (A:28-40)
3: GLYCO_HORMONE_BETA_1 (B:34-40,B:34-40)
4: GLYCO_HORMONE_ALPHA_2 (A:78-89)
5: GLYCO_HORMONE_BETA_2 (B:83-110,B:83-110)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLYCO_HORMONE_ALPHA_3
PS50277
Glycoprotein hormones alpha chain family profile.
GLHA_HUMAN
31-116
1
A:7-89
2
GLYCO_HORMONE_ALPHA_1
PS00779
Glycoprotein hormones alpha chain signature 1.
GLHA_HUMAN
52-64
1
A:28-40
3
GLYCO_HORMONE_BETA_1
PS00261
Glycoprotein hormones beta chain signature 1.
CGB3_HUMAN
54-60
1
B:34-40
CGB7_HUMAN
54-60
1
B:34-40
4
GLYCO_HORMONE_ALPHA_2
PS00780
Glycoprotein hormones alpha chain signature 2.
GLHA_HUMAN
102-115
1
A:78-89
5
GLYCO_HORMONE_BETA_2
PS00689
Glycoprotein hormones beta chain signature 2.
CGB3_HUMAN
103-130
1
B:83-110
CGB7_HUMAN
103-130
1
B:83-110
[
close PROSITE info
]
Exons
(12, 12)
Info
All Exons
Exon 1.1c (C:51-54)
Exon 1.2 (C:54-78)
Exon 1.3 (C:78-103)
Exon 1.4 (C:103-128)
Exon 1.5 (C:128-153)
Exon 1.6a (C:153-179)
Exon 1.8 (C:179-202)
Exon 1.9a (C:202-227)
Exon 1.10a (C:227-232)
Exon 2.2 (A:5-6)
Exon 2.3 (A:6-67)
Exon 2.4 (A:68-89)
View:
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Label:
All Exon Boundaries
01: Boundary -/1.1c
02: Boundary 1.1c/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6a
07: Boundary 1.6a/1.8
08: Boundary 1.8/1.9a
09: Boundary 1.9a/1.10a
10: Boundary 1.10a/1.11
11: Boundary 2.1/2.2
12: Boundary 2.2/2.3
13: Boundary 2.3/2.4
14: Boundary 2.4/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000294954
1c
ENSE00001894530
chr2:
48982832-48982650
183
LSHR_HUMAN
1-54
54
1
C:51-54
4
1.2
ENST00000294954
2
ENSE00001069341
chr2:
48958437-48958366
72
LSHR_HUMAN
54-78
25
1
C:54-78
25
1.3
ENST00000294954
3
ENSE00001069335
chr2:
48956366-48956292
75
LSHR_HUMAN
78-103
26
1
C:78-103
26
1.4
ENST00000294954
4
ENSE00001069343
chr2:
48952889-48952815
75
LSHR_HUMAN
103-128
26
1
C:103-128
26
1.5
ENST00000294954
5
ENSE00001069336
chr2:
48950835-48950761
75
LSHR_HUMAN
128-153
26
1
C:128-153
26
1.6a
ENST00000294954
6a
ENSE00001069339
chr2:
48950672-48950595
78
LSHR_HUMAN
153-179
27
1
C:153-179
27
1.8
ENST00000294954
8
ENSE00001069344
chr2:
48941193-48941125
69
LSHR_HUMAN
179-202
24
1
C:179-202
24
1.9a
ENST00000294954
9a
ENSE00001069333
chr2:
48936161-48936087
75
LSHR_HUMAN
202-227
26
1
C:202-227
26
1.10a
ENST00000294954
10a
ENSE00000809863
chr2:
48925939-48925754
186
LSHR_HUMAN
227-289
63
1
C:227-232
6
1.11
ENST00000294954
11
ENSE00001726615
chr2:
48921443-48921363
81
LSHR_HUMAN
289-316
28
0
-
-
1.12b
ENST00000294954
12b
ENSE00001925227
chr2:
48915988-48913969
2020
LSHR_HUMAN
316-699
384
0
-
-
2.1
ENST00000369582
1
ENSE00001450387
chr6:
87804824-87804731
94
GLHA_HUMAN
-
0
0
-
-
2.2
ENST00000369582
2
ENSE00000798150
chr6:
87797925-87797831
95
GLHA_HUMAN
1-30
30
1
A:5-6
2
2.3
ENST00000369582
3
ENSE00000798149
chr6:
87796152-87795968
185
GLHA_HUMAN
30-91
62
1
A:6-67
62
2.4
ENST00000369582
4
ENSE00000798148
chr6:
87795551-87795216
336
GLHA_HUMAN
92-116
25
1
A:68-89
22
[
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SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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