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1XM2
Asym. Unit
Info
Asym.Unit (153 KB)
Biol.Unit 1 (76 KB)
Biol.Unit 2 (74 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN PRL-1
Authors
:
D. G. Jeong, S. J. Kim, J. H. Kim, J. H. Son, S. E. Ryu
Date
:
01 Oct 04 (Deposition) - 25 Jan 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. G. Jeong, S. J. Kim, J. H. Kim, J. H. Son, M. R. Park, S. M. Lim, T. S. Yoon, S. E. Ryu
Trimeric Structure Of Prl-1 Phosphatase Reveals An Active Enzyme Conformation And Regulation Mechanisms
J. Mol. Biol. V. 345 401 2005
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 24)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
18
Mod. Amino Acid
SELENOMETHIONINE
2
SO4
6
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:104 , VAL A:105 , ALA A:106 , GLY A:107 , LEU A:108 , GLY A:109 , ARG A:110 , HOH A:206
BINDING SITE FOR RESIDUE SO4 A 181
2
AC2
SOFTWARE
ASP B:72 , SER B:104 , VAL B:105 , ALA B:106 , GLY B:107 , LEU B:108 , GLY B:109 , ARG B:110
BINDING SITE FOR RESIDUE SO4 B 182
3
AC3
SOFTWARE
SER C:104 , VAL C:105 , ALA C:106 , GLY C:107 , LEU C:108 , GLY C:109 , ARG C:110
BINDING SITE FOR RESIDUE SO4 C 183
4
AC4
SOFTWARE
SER D:104 , ALA D:106 , GLY D:107 , LEU D:108 , GLY D:109 , ARG D:110
BINDING SITE FOR RESIDUE SO4 D 184
5
AC5
SOFTWARE
SER E:104 , VAL E:105 , ALA E:106 , LEU E:108 , GLY E:109 , ARG E:110
BINDING SITE FOR RESIDUE SO4 E 185
6
AC6
SOFTWARE
SER F:104 , VAL F:105 , ALA F:106 , GLY F:107 , LEU F:108 , GLY F:109 , ARG F:110
BINDING SITE FOR RESIDUE SO4 F 186
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: TYR_PHOSPHATASE_2 (A:82-148,B:82-148,C:82-148,D:82-14...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TYR_PHOSPHATASE_2
PS50056
Tyrosine specific protein phosphatases family profile.
TP4A1_HUMAN
82-148
6
A:82-148
B:82-148
C:82-148
D:82-148
E:82-148
F:82-148
[
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Exons
(5, 30)
Info
All Exons
Exon 1.5c (A:8-35 | B:8-35 | C:8-35 | D:8-35 ...)
Exon 1.6 (A:36-66 | B:36-66 | C:36-66 | D:36...)
Exon 1.7 (A:67-110 | B:67-110 | C:67-110 | D...)
Exon 1.8 (A:110-135 | B:110-135 | C:110-135 ...)
Exon 1.9c (A:135-156 | B:135-156 | C:135-156 ...)
View:
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All Exon Boundaries
1: Boundary 1.3a/1.5c
2: Boundary 1.5c/1.6
3: Boundary 1.6/1.7
4: Boundary 1.7/1.8
5: Boundary 1.8/1.9c
6: Boundary 1.9c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000370651
3a
ENSE00001860369
chr6:
64282394-64282624
231
TP4A1_HUMAN
-
0
0
-
-
1.5c
ENST00000370651
5c
ENSE00000999818
chr6:
64286341-64286890
550
TP4A1_HUMAN
1-35
35
6
A:8-35
B:8-35
C:8-35
D:8-35 (gaps)
E:8-35
F:8-35 (gaps)
28
28
28
28
28
28
1.6
ENST00000370651
6
ENSE00000757682
chr6:
64288342-64288434
93
TP4A1_HUMAN
36-66
31
6
A:36-66
B:36-66
C:36-66
D:36-66 (gaps)
E:36-66
F:36-66
31
31
31
31
31
31
1.7
ENST00000370651
7
ENSE00000757684
chr6:
64288803-64288933
131
TP4A1_HUMAN
67-110
44
6
A:67-110
B:67-110
C:67-110
D:67-110
E:67-110
F:67-110
44
44
44
44
44
44
1.8
ENST00000370651
8
ENSE00000757686
chr6:
64289162-64289236
75
TP4A1_HUMAN
110-135
26
6
A:110-135
B:110-135
C:110-135
D:110-135
E:110-135
F:110-135
26
26
26
26
26
26
1.9c
ENST00000370651
9c
ENSE00001453229
chr6:
64289962-64293492
3531
TP4A1_HUMAN
135-173
39
6
A:135-156
B:135-156
C:135-156
D:135-156
E:135-156
F:135-156
22
22
22
22
22
22
[
close EXON info
]
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1xm2a_ (A:)
1b: SCOP_d1xm2c_ (C:)
1c: SCOP_d1xm2d_ (D:)
1d: SCOP_d1xm2e_ (E:)
1e: SCOP_d1xm2f_ (F:)
1f: SCOP_d1xm2b_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
(Phosphotyrosine protein) phosphatases II
(296)
Superfamily
:
(Phosphotyrosine protein) phosphatases II
(296)
Family
:
Dual specificity phosphatase-like
(27)
Protein domain
:
automated matches
(8)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d1xm2a_
A:
1b
d1xm2c_
C:
1c
d1xm2d_
D:
1d
d1xm2e_
E:
1e
d1xm2f_
F:
1f
d1xm2b_
B:
[
close SCOP info
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1xm2A00 (A:8-155)
1b: CATH_1xm2B00 (B:8-155)
1c: CATH_1xm2C00 (C:8-155)
1d: CATH_1xm2E00 (E:8-155)
1e: CATH_1xm2F00 (F:8-155)
1f: CATH_1xm2D00 (D:8-155)
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Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Protein-Tyrosine Phosphatase; Chain A
(262)
Homologous Superfamily
:
Protein tyrosine phosphatase superfamily
(228)
Human (Homo sapiens)
(196)
1a
1xm2A00
A:8-155
1b
1xm2B00
B:8-155
1c
1xm2C00
C:8-155
1d
1xm2E00
E:8-155
1e
1xm2F00
F:8-155
1f
1xm2D00
D:8-155
[
close CATH info
]
Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Y_phosphatase_1xm2F01 (F:54-152)
1b: PFAM_Y_phosphatase_1xm2F02 (F:54-152)
1c: PFAM_Y_phosphatase_1xm2F03 (F:54-152)
1d: PFAM_Y_phosphatase_1xm2F04 (F:54-152)
1e: PFAM_Y_phosphatase_1xm2F05 (F:54-152)
1f: PFAM_Y_phosphatase_1xm2F06 (F:54-152)
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Organisms
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)
(
)
Clan
:
Phosphatase
(121)
Family
:
Y_phosphatase
(93)
Homo sapiens (Human)
(82)
1a
Y_phosphatase-1xm2F01
F:54-152
1b
Y_phosphatase-1xm2F02
F:54-152
1c
Y_phosphatase-1xm2F03
F:54-152
1d
Y_phosphatase-1xm2F04
F:54-152
1e
Y_phosphatase-1xm2F05
F:54-152
1f
Y_phosphatase-1xm2F06
F:54-152
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