PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
1XEQ
Biol. Unit 1
Info
Asym.Unit (41 KB)
Biol.Unit 1 (35 KB)
Biol.Unit 2 (68 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL TRUCTURE OF RNA BINDING DOMAIN OF INFLUENZA B VIRUS NON-STRUCTURAL PROTEIN
Authors
:
J. A. Khan, C. Yin, R. M. Krug, G. T. Montelione, L. Tong, Northeast Stru Genomics Consortium (Nesg)
Date
:
11 Sep 04 (Deposition) - 20 Sep 05 (Release) - 24 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
Influenza B Virus, Rna Binding Domain, Non-Structural Protein, Ns1B, Structural Genomics, Psi, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Yin, J. A. Khan, G. V. Swapna, A. Ertekin, R. M. Krug, L. Tong, G. T. Montelione
Conserved Surface Features Form The Double-Stranded Rna Binding Site Of Non-Structural Protein 1 (Ns1) From Influenza A And B Viruses.
J. Biol. Chem. V. 282 20584 2007
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1b: BROMIDE ION (BRb)
1c: BROMIDE ION (BRc)
1d: BROMIDE ION (BRd)
1e: BROMIDE ION (BRe)
1f: BROMIDE ION (BRf)
1g: BROMIDE ION (BRg)
1h: BROMIDE ION (BRh)
1i: BROMIDE ION (BRi)
1j: BROMIDE ION (BRj)
1k: BROMIDE ION (BRk)
1l: BROMIDE ION (BRl)
1m: BROMIDE ION (BRm)
1n: BROMIDE ION (BRn)
1o: BROMIDE ION (BRo)
1p: BROMIDE ION (BRp)
1q: BROMIDE ION (BRq)
1r: BROMIDE ION (BRr)
1s: BROMIDE ION (BRs)
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU B:32 , LYS B:52
BINDING SITE FOR RESIDUE BR B 301
02
AC2
SOFTWARE
GLY B:13 , GLY B:15
BINDING SITE FOR RESIDUE BR B 302
03
AC3
SOFTWARE
ARG B:33
BINDING SITE FOR RESIDUE BR B 303
04
AC4
SOFTWARE
ASP A:92 , HOH A:436
BINDING SITE FOR RESIDUE BR A 304
05
AC5
SOFTWARE
ARG A:33 , HOH A:375
BINDING SITE FOR RESIDUE BR A 305
06
AC6
SOFTWARE
LYS A:83 , ALA A:95
BINDING SITE FOR RESIDUE BR A 306
07
AC7
SOFTWARE
ARG A:38 , GLU B:11
BINDING SITE FOR RESIDUE BR A 308
08
AC8
SOFTWARE
GLY A:99 , ALA B:19 , ASN B:22
BINDING SITE FOR RESIDUE BR B 309
09
AC9
SOFTWARE
GLN A:37 , GLY A:96 , ILE A:97 , ASP B:92
BINDING SITE FOR RESIDUE BR A 310
10
BC1
SOFTWARE
ARG A:33 , LYS A:86 , GLY A:96 , HOH A:364 , LEU B:89
BINDING SITE FOR RESIDUE BR A 311
11
BC2
SOFTWARE
LYS A:83
BINDING SITE FOR RESIDUE BR A 312
12
BC3
SOFTWARE
GLU A:101 , PRO A:102 , TYR A:103
BINDING SITE FOR RESIDUE BR A 313
13
BC4
SOFTWARE
TYR A:31 , ARG A:47 , ARG B:47
BINDING SITE FOR RESIDUE BR A 314
14
BC5
SOFTWARE
ARG A:47
BINDING SITE FOR RESIDUE BR A 315
15
BC6
SOFTWARE
ASN A:22 , MET A:84
BINDING SITE FOR RESIDUE BR A 316
16
BC7
SOFTWARE
SER B:35 , TRP B:36 , HIS B:49
BINDING SITE FOR RESIDUE BR B 317
17
BC8
SOFTWARE
TYR A:42 , PRO A:43 , HOH B:334
BINDING SITE FOR RESIDUE BR A 318
18
BC9
SOFTWARE
MET B:72 , SER B:73
BINDING SITE FOR RESIDUE BR B 319
19
CC1
SOFTWARE
SER B:73 , LEU B:74 , GLU B:75
BINDING SITE FOR RESIDUE BR B 320
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1xeqa1 (A:15-103)
1b: SCOP_d1xeqb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
S15/NS1 RNA-binding domain
(66)
Superfamily
:
S15/NS1 RNA-binding domain
(66)
Family
:
N-terminal, RNA-binding domain of nonstructural protein NS1
(9)
Protein domain
:
N-terminal, RNA-binding domain of nonstructural protein NS1
(3)
Influenza B virus [TaxId: 11520]
(1)
1a
d1xeqa1
A:15-103
1b
d1xeqb_
B:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Flu_B_NS1_1xeqB01 (B:9-93)
1b: PFAM_Flu_B_NS1_1xeqB02 (B:9-93)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Flu_B_NS1]
(2)
Family
:
Flu_B_NS1
(2)
Influenza B virus (strain B/Lee/1940)
(2)
1a
Flu_B_NS1-1xeqB01
B:9-93
1b
Flu_B_NS1-1xeqB02
B:9-93
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (41 KB)
Header - Asym.Unit
Biol.Unit 1 (35 KB)
Header - Biol.Unit 1
Biol.Unit 2 (68 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1XEQ
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
