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1XEQ
Asym. Unit
Info
Asym.Unit (41 KB)
Biol.Unit 1 (35 KB)
Biol.Unit 2 (68 KB)
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(1)
Title
:
CRYSTAL TRUCTURE OF RNA BINDING DOMAIN OF INFLUENZA B VIRUS NON-STRUCTURAL PROTEIN
Authors
:
J. A. Khan, C. Yin, R. M. Krug, G. T. Montelione, L. Tong, Northeast Stru Genomics Consortium (Nesg)
Date
:
11 Sep 04 (Deposition) - 20 Sep 05 (Release) - 24 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
Influenza B Virus, Rna Binding Domain, Non-Structural Protein, Ns1B, Structural Genomics, Psi, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Yin, J. A. Khan, G. V. Swapna, A. Ertekin, R. M. Krug, L. Tong, G. T. Montelione
Conserved Surface Features Form The Double-Stranded Rna Binding Site Of Non-Structural Protein 1 (Ns1) From Influenza A And B Viruses.
J. Biol. Chem. V. 282 20584 2007
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Hetero Components
(1, 19)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1b: BROMIDE ION (BRb)
1c: BROMIDE ION (BRc)
1d: BROMIDE ION (BRd)
1e: BROMIDE ION (BRe)
1f: BROMIDE ION (BRf)
1g: BROMIDE ION (BRg)
1h: BROMIDE ION (BRh)
1i: BROMIDE ION (BRi)
1j: BROMIDE ION (BRj)
1k: BROMIDE ION (BRk)
1l: BROMIDE ION (BRl)
1m: BROMIDE ION (BRm)
1n: BROMIDE ION (BRn)
1o: BROMIDE ION (BRo)
1p: BROMIDE ION (BRp)
1q: BROMIDE ION (BRq)
1r: BROMIDE ION (BRr)
1s: BROMIDE ION (BRs)
View:
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No.
Name
Count
Type
Full Name
1
BR
19
Ligand/Ion
BROMIDE ION
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU B:32 , LYS B:52
BINDING SITE FOR RESIDUE BR B 301
02
AC2
SOFTWARE
GLY B:13 , GLY B:15
BINDING SITE FOR RESIDUE BR B 302
03
AC3
SOFTWARE
ARG B:33
BINDING SITE FOR RESIDUE BR B 303
04
AC4
SOFTWARE
ASP A:92 , HOH A:436
BINDING SITE FOR RESIDUE BR A 304
05
AC5
SOFTWARE
ARG A:33 , HOH A:375
BINDING SITE FOR RESIDUE BR A 305
06
AC6
SOFTWARE
LYS A:83 , ALA A:95
BINDING SITE FOR RESIDUE BR A 306
07
AC7
SOFTWARE
ARG A:38 , GLU B:11
BINDING SITE FOR RESIDUE BR A 308
08
AC8
SOFTWARE
GLY A:99 , ALA B:19 , ASN B:22
BINDING SITE FOR RESIDUE BR B 309
09
AC9
SOFTWARE
GLN A:37 , GLY A:96 , ILE A:97 , ASP B:92
BINDING SITE FOR RESIDUE BR A 310
10
BC1
SOFTWARE
ARG A:33 , LYS A:86 , GLY A:96 , HOH A:364 , LEU B:89
BINDING SITE FOR RESIDUE BR A 311
11
BC2
SOFTWARE
LYS A:83
BINDING SITE FOR RESIDUE BR A 312
12
BC3
SOFTWARE
GLU A:101 , PRO A:102 , TYR A:103
BINDING SITE FOR RESIDUE BR A 313
13
BC4
SOFTWARE
TYR A:31 , ARG A:47 , ARG B:47
BINDING SITE FOR RESIDUE BR A 314
14
BC5
SOFTWARE
ARG A:47
BINDING SITE FOR RESIDUE BR A 315
15
BC6
SOFTWARE
ASN A:22 , MET A:84
BINDING SITE FOR RESIDUE BR A 316
16
BC7
SOFTWARE
SER B:35 , TRP B:36 , HIS B:49
BINDING SITE FOR RESIDUE BR B 317
17
BC8
SOFTWARE
TYR A:42 , PRO A:43 , HOH B:334
BINDING SITE FOR RESIDUE BR A 318
18
BC9
SOFTWARE
MET B:72 , SER B:73
BINDING SITE FOR RESIDUE BR B 319
19
CC1
SOFTWARE
SER B:73 , LEU B:74 , GLU B:75
BINDING SITE FOR RESIDUE BR B 320
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1xeqa1 (A:15-103)
1b: SCOP_d1xeqb_ (B:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
S15/NS1 RNA-binding domain
(66)
Superfamily
:
S15/NS1 RNA-binding domain
(66)
Family
:
N-terminal, RNA-binding domain of nonstructural protein NS1
(9)
Protein domain
:
N-terminal, RNA-binding domain of nonstructural protein NS1
(3)
Influenza B virus [TaxId: 11520]
(1)
1a
d1xeqa1
A:15-103
1b
d1xeqb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Flu_B_NS1_1xeqB01 (B:9-93)
1b: PFAM_Flu_B_NS1_1xeqB02 (B:9-93)
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Clan
:
no clan defined [family: Flu_B_NS1]
(2)
Family
:
Flu_B_NS1
(2)
Influenza B virus (strain B/Lee/1940)
(2)
1a
Flu_B_NS1-1xeqB01
B:9-93
1b
Flu_B_NS1-1xeqB02
B:9-93
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Asymmetric Unit 1
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Asym.Unit (41 KB)
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