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1X6B
Asym. Unit
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Asym.Unit (395 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURES OF THE SH3 DOMAIN OF HUMAN RHO GUANINE EXCHANGE FACTOR (GEF) 16
Authors
:
M. Sato, K. Saito, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
17 May 05 (Deposition) - 17 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Sh3 Domain, Neuroblastoma, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Sato, K. Saito, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama
Solution Structures Of The Sh3 Domain Of Human Rho Guanine Exchange Factor (Gef) 16
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_061796 (E67K, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_061796
E
681
K
ARHGG_HUMAN
Polymorphism
56309807
A
E
67
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SH3 (A:26-73)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH3
PS50002
Src homology 3 (SH3) domain profile.
ARHGG_HUMAN
640-689
1
A:26-73
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Exons
(4, 4)
Info
All Exons
Exon 1.12c (A:1-6 (gaps))
Exon 1.13 (A:6-16 (gaps))
Exon 1.14 (A:16-50)
Exon 1.15b (A:50-79 (gaps))
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All Exon Boundaries
1: Boundary 1.12a/1.12c
2: Boundary 1.12c/1.13
3: Boundary 1.13/1.14
4: Boundary 1.14/1.15b
5: Boundary 1.15b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000378378
1a
ENSE00001710589
chr1:
3370990-3371375
386
ARHGG_HUMAN
-
0
0
-
-
1.2
ENST00000378378
2
ENSE00002146664
chr1:
3379630-3380236
607
ARHGG_HUMAN
1-196
196
0
-
-
1.3b
ENST00000378378
3b
ENSE00001689961
chr1:
3382712-3382757
46
ARHGG_HUMAN
197-212
16
0
-
-
1.4b
ENST00000378378
4b
ENSE00001713504
chr1:
3383732-3383901
170
ARHGG_HUMAN
212-268
57
0
-
-
1.5b
ENST00000378378
5b
ENSE00001733234
chr1:
3385444-3385500
57
ARHGG_HUMAN
269-287
19
0
-
-
1.6
ENST00000378378
6
ENSE00001661541
chr1:
3385997-3386157
161
ARHGG_HUMAN
288-341
54
0
-
-
1.8b
ENST00000378378
8b
ENSE00000896165
chr1:
3389642-3389794
153
ARHGG_HUMAN
341-392
52
0
-
-
1.9b
ENST00000378378
9b
ENSE00000896168
chr1:
3389957-3390086
130
ARHGG_HUMAN
392-435
44
0
-
-
1.10
ENST00000378378
10
ENSE00000896171
chr1:
3391272-3391346
75
ARHGG_HUMAN
436-460
25
0
-
-
1.11b
ENST00000378378
11b
ENSE00000896174
chr1:
3392534-3392626
93
ARHGG_HUMAN
461-491
31
0
-
-
1.12a
ENST00000378378
12a
ENSE00000896177
chr1:
3394439-3394590
152
ARHGG_HUMAN
492-542
51
0
-
-
1.12c
ENST00000378378
12c
ENSE00000896180
chr1:
3394988-3395176
189
ARHGG_HUMAN
542-605
64
1
A:1-6 (gaps)
13
1.13
ENST00000378378
13
ENSE00000896183
chr1:
3396081-3396154
74
ARHGG_HUMAN
605-630
26
1
A:6-16 (gaps)
26
1.14
ENST00000378378
14
ENSE00000896186
chr1:
3396376-3396477
102
ARHGG_HUMAN
630-664
35
1
A:16-50
35
1.15b
ENST00000378378
15b
ENSE00001477264
chr1:
3397012-3397677
666
ARHGG_HUMAN
664-709
46
1
A:50-79 (gaps)
32
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SCOP Domains
(0, 0)
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1x6bA01 (A:16-79)
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Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
SH3 Domains
(267)
Human (Homo sapiens)
(133)
1a
1x6bA01
A:16-79
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_SH3_1_1x6bA01 (A:24-67)
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Clan
:
SH3
(175)
Family
:
SH3_1
(141)
Homo sapiens (Human)
(69)
1a
SH3_1-1x6bA01
A:24-67
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Asymmetric Unit 1
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