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1X68
Asym. Unit
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Asym.Unit (355 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURES OF THE C-TERMINAL LIM DOMAIN OF HUMAN FHL5 PROTEIN
Authors
:
N. Nameki, A. Sasagawa, M. Sato, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
17 May 05 (Deposition) - 17 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Four-And-A-Half Lim Protein 5, Zinc Finger Domain, An Actin- Interacting Protein, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Protein Binding
(Keyword Search:
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Reference
:
N. Nameki, A. Sasagawa, M. Sato, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama
Solution Structures Of The C-Terminal Lim Domain Of Human Fhl5 Protein
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:8 , CYS A:11 , HIS A:32 , CYS A:35
BINDING SITE FOR RESIDUE ZN A 201
2
AC2
SOFTWARE
CYS A:38 , CYS A:41 , CYS A:59 , CYS A:62
BINDING SITE FOR RESIDUE ZN A 401
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_056162 (S29R, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_056162
S
243
R
FHL5_HUMAN
Polymorphism
9373985
A
S
29
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: LIM_DOMAIN_2 (-|A:6-7|-|A:9-69)
2: LIM_DOMAIN_1 (-|-|A:6-7|A:8-45)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIM_DOMAIN_2
PS50023
LIM domain profile.
FHL5_HUMAN
39-100
161-220
101-160
223-283
2
-
A:6-7
-
A:9-69
2
LIM_DOMAIN_1
PS00478
LIM zinc-binding domain signature.
FHL5_HUMAN
41-76
102-137
163-196
222-259
2
-
-
A:6-7
A:8-45
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Exons
(4, 4)
Info
All Exons
Exon 1.4 (A:1-1)
Exon 1.5 (A:1-4 (gaps))
Exon 1.6b (A:5-17 (gaps))
Exon 1.7 (A:17-70)
View:
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All Exon Boundaries
1: Boundary 1.3/1.4
2: Boundary 1.4/1.5
3: Boundary 1.5/1.6b
4: Boundary 1.6b/1.7
5: Boundary 1.7/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000326771
1
ENSE00001698333
chr6:
97010460-97010596
137
FHL5_HUMAN
-
0
0
-
-
1.2
ENST00000326771
2
ENSE00001356882
chr6:
97011001-97011231
231
FHL5_HUMAN
-
0
0
-
-
1.3
ENST00000326771
3
ENSE00000840214
chr6:
97051478-97051648
171
FHL5_HUMAN
1-53
53
0
-
-
1.4
ENST00000326771
4
ENSE00001722415
chr6:
97052626-97052800
175
FHL5_HUMAN
54-112
59
1
A:1-1
1
1.5
ENST00000326771
5
ENSE00000760835
chr6:
97053778-97053947
170
FHL5_HUMAN
112-168
57
1
A:1-4 (gaps)
37
1.6b
ENST00000326771
6b
ENSE00000760836
chr6:
97058448-97058634
187
FHL5_HUMAN
169-231
63
1
A:5-17 (gaps)
61
1.7
ENST00000326771
7
ENSE00001269305
chr6:
97063485-97064444
960
FHL5_HUMAN
231-284
54
1
A:17-70
54
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1x68a1 (A:8-36)
1b: SCOP_d1x68a2 (A:37-70)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Superfamily
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Family
:
LIM domain
(37)
Protein domain
:
Four and a half LIM domains protein 5, FHL-5
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1x68a1
A:8-36
1b
d1x68a2
A:37-70
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_LIM_1x68A01 (A:8-65)
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Clan
:
no clan defined [family: LIM]
(23)
Family
:
LIM
(23)
Homo sapiens (Human)
(18)
1a
LIM-1x68A01
A:8-65
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Chain A
Asymmetric Unit 1
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