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Asym. Unit
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Asym.Unit (661 KB)
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Models
(20 )
Title
:
THE SOLUTION STRUCTURE OF THE SECOND THIOREDOXIN-LIKE DOMAIN OF HUMAN PROTEIN DISULFIDE-ISOMERASE A6
Authors
:
N. Tochio, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
15 May 05 (Deposition) - 15 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Pdia6, Erp5, P5, Txndc7, Thioredoxin Like Domain, Redox, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Isomerase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
N. Tochio, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama
The Solution Structure Of The Second Thioredoxin-Like Domain Of Human Protein Disulfide-Isomerase A6
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_022152 (K61R, chain A, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_022152
K
214
R
PDIA6_HUMAN
Polymorphism
4807
A
K
61
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: THIOREDOXIN_2 (-|A:8-127)
2: THIOREDOXIN_1 (-|A:29-47)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOREDOXIN_2
PS51352
Thioredoxin domain profile.
PDIA6_HUMAN
2-133
154-287
1
-
A:8-127
2
THIOREDOXIN_1
PS00194
Thioredoxin family active site.
PDIA6_HUMAN
47-65
182-200
1
-
A:29-47
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Exons
(6, 6)
Info
All Exons
Exon 1.13 (A:1-7 (gaps))
Exon 1.14 (A:8-42)
Exon 1.15 (A:42-80)
Exon 1.16 (A:81-127)
Exon 1.17 (A:128-129)
Exon 1.18 (A:129-133)
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All Exon Boundaries
1: Boundary 1.12b/1.13
2: Boundary 1.13/1.14
3: Boundary 1.14/1.15
4: Boundary 1.15/1.16
5: Boundary 1.16/1.17
6: Boundary 1.17/1.18
7: Boundary 1.18/1.19
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.8a
ENST00000272227
8a
ENSE00001401250
chr2:
10952970-10952804
167
PDIA6_HUMAN
1-7
7
0
-
-
1.10
ENST00000272227
10
ENSE00000996575
chr2:
10942766-10942625
142
PDIA6_HUMAN
7-54
48
0
-
-
1.11
ENST00000272227
11
ENSE00000962411
chr2:
10937883-10937826
58
PDIA6_HUMAN
54-73
20
0
-
-
1.12b
ENST00000272227
12b
ENSE00000962412
chr2:
10937333-10937207
127
PDIA6_HUMAN
74-116
43
0
-
-
1.13
ENST00000272227
13
ENSE00000962413
chr2:
10933328-10933222
107
PDIA6_HUMAN
116-151
36
1
A:1-7 (gaps)
9
1.14
ENST00000272227
14
ENSE00000962414
chr2:
10932051-10931921
131
PDIA6_HUMAN
152-195
44
1
A:8-42
35
1.15
ENST00000272227
15
ENSE00000962415
chr2:
10930959-10930845
115
PDIA6_HUMAN
195-233
39
1
A:42-80
39
1.16
ENST00000272227
16
ENSE00000962416
chr2:
10930015-10929875
141
PDIA6_HUMAN
234-280
47
1
A:81-127
47
1.17
ENST00000272227
17
ENSE00000962418
chr2:
10929107-10929023
85
PDIA6_HUMAN
281-309
29
1
A:128-129
2
1.18
ENST00000272227
18
ENSE00000962419
chr2:
10928895-10928823
73
PDIA6_HUMAN
309-333
25
1
A:129-133
5
1.19
ENST00000272227
19
ENSE00000962420
chr2:
10927565-10927407
159
PDIA6_HUMAN
333-386
54
0
-
-
1.20
ENST00000272227
20
ENSE00000962421
chr2:
10925156-10925060
97
PDIA6_HUMAN
386-418
33
0
-
-
1.21c
ENST00000272227
21c
ENSE00001893291
chr2:
10924452-10923517
936
PDIA6_HUMAN
419-440
22
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1x5da_ (A:)
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
automated matches
(347)
Protein domain
:
automated matches
(347)
Human (Homo sapiens) [TaxId: 9606]
(87)
1a
d1x5da_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1x5dA01 (A:1-120)
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Class
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Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Human (Homo sapiens)
(186)
1a
1x5dA01
A:1-120
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Thioredoxin_1x5dA01 (A:8-114)
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Clan
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Thioredoxin
(367)
Family
:
Thioredoxin
(82)
Homo sapiens (Human)
(20)
1a
Thioredoxin-1x5dA01
A:8-114
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Chain A
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