PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1X4V
Asym. Unit
Info
Asym.Unit (313 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE ZF-AN1 DOMAIN FROM HUMAN HYPOTHETICAL PROTEIN LOC130617
Authors
:
T. Tomizawa, T. Kigawa, S. Koshiba, M. Inoue, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
15 May 05 (Deposition) - 15 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Zf-An1 Domain, Zinc Binding, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Tomizawa, T. Kigawa, S. Koshiba, M. Inoue, S. Yokoyama
Solution Structure Of The Zf-An1 Domain From Human Hypothetical Protein Loc130617
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:15 , ARG A:17 , CYS A:20 , CYS A:38 , HIS A:41
BINDING SITE FOR RESIDUE ZN A 201
2
AC2
SOFTWARE
CYS A:30 , CYS A:33 , HIS A:47 , CYS A:49
BINDING SITE FOR RESIDUE ZN A 401
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZF_AN1 (-|A:12-57)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_AN1
PS51039
Zinc finger AN1-type profile.
ZFN2B_HUMAN
7-52
97-145
1
-
A:12-57
[
close PROSITE info
]
Exons
(5, 5)
Info
All Exons
Exon 1.5d (A:1-3)
Exon 1.5h (A:4-9 (gaps))
Exon 1.5j (A:10-57)
Exon 1.5m (A:58-61)
Exon 1.5q (A:62-63)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.4b/1.5d
2: Boundary 1.5d/1.5h
3: Boundary 1.5h/1.5j
4: Boundary 1.5j/1.5m
5: Boundary 1.5m/1.5q
6: Boundary 1.5q/1.5x
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4b
ENST00000289528
4b
ENSE00001588418
chr2:
220071515-220071764
250
ZFN2B_HUMAN
1-19
19
0
-
-
1.5d
ENST00000289528
5d
ENSE00002143550
chr2:
220072049-220072143
95
ZFN2B_HUMAN
19-50
32
1
A:1-3
3
1.5h
ENST00000289528
5h
ENSE00001075501
chr2:
220072370-220072501
132
ZFN2B_HUMAN
51-94
44
1
A:4-9 (gaps)
26
1.5j
ENST00000289528
5j
ENSE00001763568
chr2:
220072609-220072760
152
ZFN2B_HUMAN
95-145
51
1
A:10-57
48
1.5m
ENST00000289528
5m
ENSE00001706743
chr2:
220072978-220073070
93
ZFN2B_HUMAN
145-176
32
1
A:58-61
4
1.5q
ENST00000289528
5q
ENSE00001075477
chr2:
220073148-220073208
61
ZFN2B_HUMAN
176-196
21
1
A:62-63
2
1.5x
ENST00000289528
5x
ENSE00001039544
chr2:
220073294-220073361
68
ZFN2B_HUMAN
197-219
23
0
-
-
1.5ab
ENST00000289528
5ab
ENSE00001075495
chr2:
220073699-220073771
73
ZFN2B_HUMAN
219-243
25
0
-
-
1.5af
ENST00000289528
5af
ENSE00001182758
chr2:
220073984-220074373
390
ZFN2B_HUMAN
244-257
14
0
-
-
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_zf_AN1_1x4vA01 (A:15-57)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: zf-AN1]
(8)
Family
:
zf-AN1
(8)
Homo sapiens (Human)
(2)
1a
zf-AN1-1x4vA01
A:15-57
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (313 KB)
Header - Asym.Unit
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1X4V
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
