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1X3Z
Asym. Unit
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Asym.Unit (134 KB)
Biol.Unit 1 (128 KB)
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(1)
Title
:
STRUCTURE OF A PEPTIDE:N-GLYCANASE-RAD23 COMPLEX
Authors
:
J. -H. Lee, J. M. Choi, C. Lee, K. J. Yi, Y. Cho
Date
:
11 May 05 (Deposition) - 14 Jun 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,I
Biol. Unit 1: A,B,I (1x)
Keywords
:
Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. H. Lee, J. M. Choi, C. Lee, K. J. Yi, Y. Cho
Structure Of A Peptide:N-Glycanase-Rad23 Complex: Insight Into The Deglycosylation For Denatured Glycoproteins.
Proc. Natl. Acad. Sci. Usa V. 102 9144 2005
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: FLUOROMETHANE (CF0a)
2a: SUCROSE (SUCa)
2b: SUCROSE (SUCb)
3a: ZINC ION (ZNa)
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No.
Name
Count
Type
Full Name
1
CF0
1
Mod. Amino Acid
FLUOROMETHANE
2
SUC
2
Ligand/Ion
SUCROSE
3
ZN
1
Ligand/Ion
ZINC ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TRP A:123 , ASP A:217 , HIS A:218 , GLU A:238 , TRP A:251 , HOH A:1024 , ASP I:3
BINDING SITE FOR RESIDUE SUC A1001
2
AC2
SOFTWARE
LYS A:117 , GLU A:238 , GLN A:239 , SER A:240 , GLN A:243 , ILE A:246
BINDING SITE FOR RESIDUE SUC A1002
3
AC3
SOFTWARE
CYS A:129 , CYS A:132 , CYS A:165 , CYS A:168
BINDING SITE FOR RESIDUE ZN A 999
4
AC4
SOFTWARE
ARG A:176 , ASN A:178 , ARG A:190 , CYS A:191 , GLY A:192 , GLU A:193 , ASP A:217 , SUC A:1001
BINDING SITE FOR CHAIN I OF PEPTIDE PHQ-VAL-ALA- ASP-CF0
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(2, 2)
Info
All Exons
Exon 1.1 (B:253-309)
Exon 2.1 (A:8-327)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
3: Boundary -/2.1
4: Boundary 2.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YEL037C
1
YEL037C.1
V:82603-81407
1197
RAD23_YEAST
1-398
398
1
B:253-309
57
2.1
YPL096W
1
YPL096W.1
XVI:366924-368015
1092
PNG1_YEAST
1-363
363
1
A:8-327
320
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1x3zb_ (B:)
2a: SCOP_d1x3za_ (A:)
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Protein Domains
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Organisms
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
XPC-binding domain
(10)
Superfamily
:
XPC-binding domain
(10)
Family
:
XPC-binding domain
(8)
Protein domain
:
automated matches
(3)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(1)
1a
d1x3zb_
B:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cysteine proteinases
(392)
Superfamily
:
Cysteine proteinases
(392)
Family
:
Transglutaminase core
(22)
Protein domain
:
automated matches
(3)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(1)
2a
d1x3za_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Rad4_1x3zA01 (A:213-308)
2a: PFAM_XPC_binding_1x3zB01 (B:258-309)
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Clans
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Clan
:
Peptidase_CA
(169)
Family
:
Rad4
(5)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(5)
1a
Rad4-1x3zA01
A:213-308
Clan
:
no clan defined [family: XPC-binding]
(8)
Family
:
XPC-binding
(8)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(5)
2a
XPC-binding-1x3zB01
B:258-309
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Asymmetric Unit 1
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Asym.Unit (134 KB)
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