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1WXS
Asym. Unit
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Asym.Unit (244 KB)
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Models
(10 )
Title
:
SOLUTION STRUCTURE OF UFM1, A UBIQUITIN-FOLD MODIFIER
Authors
:
H. Sasakawa, E. Sakata, Y. Yamaguchi, M. Komatsu, K. Tatsumi, E. Kominami, K. Tanaka, K. Kato
Date
:
01 Feb 05 (Deposition) - 18 Apr 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (10 x)
Keywords
:
Ubiquitin-Fold, Structural Genomics, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Sasakawa, E. Sakata, Y. Yamaguchi, M. Komatsu, K. Tatsumi, E. Kominami, K. Tanaka, K. Kato
Solution Structure And Dynamics Of Ufm1, A Ubiquitin-Fold Modifier 1
Biochem. Biophys. Res. Commun. V. 343 21 2006
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
(6, 6)
Info
All Exons
Exon 1.1d (A:1-1)
Exon 1.2b (A:1-20)
Exon 1.3a (A:20-39)
Exon 1.4 (A:40-53)
Exon 1.5a (A:53-64)
Exon 1.6c (A:64-83)
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All Exon Boundaries
1: Boundary -/1.1d
2: Boundary 1.1d/1.2b
3: Boundary 1.2b/1.3a
4: Boundary 1.3a/1.4
5: Boundary 1.4/1.5a
6: Boundary 1.5a/1.6c
7: Boundary 1.6c/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1d
ENST00000239878
1d
ENSE00001823289
chr13:
38924018-38924058
41
UFM1_HUMAN
1-1
1
1
A:1-1
1
1.2b
ENST00000239878
2b
ENSE00001716234
chr13:
38924136-38924192
57
UFM1_HUMAN
1-20
20
1
A:1-20
20
1.3a
ENST00000239878
3a
ENSE00000817162
chr13:
38928376-38928433
58
UFM1_HUMAN
20-39
20
1
A:20-39
20
1.4
ENST00000239878
4
ENSE00000817163
chr13:
38932230-38932269
40
UFM1_HUMAN
40-53
14
1
A:40-53
14
1.5a
ENST00000239878
5a
ENSE00000817164
chr13:
38933438-38933470
33
UFM1_HUMAN
53-64
12
1
A:53-64
12
1.6c
ENST00000239878
6c
ENSE00001801205
chr13:
38934848-38937140
2293
UFM1_HUMAN
64-85
22
1
A:64-83
20
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SCOP Domains
(1, 1)
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1a: SCOP_d1wxsa1 (A:1-83)
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Folds
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
BM-002-like
(3)
Protein domain
:
Ubiquitin-fold modifier 1
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1wxsa1
A:1-83
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_1wxsA00 (A:-4-83)
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Organisms
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)
(
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Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
(286)
Human (Homo sapiens)
(177)
1a
1wxsA00
A:-4-83
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_Ufm1_1wxsA01 (A:2-77)
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Clan
:
Ubiquitin
(279)
Family
:
Ufm1
(2)
Homo sapiens (Human)
(1)
1a
Ufm1-1wxsA01
A:2-77
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Asymmetric Unit 1
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