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1WQ6
Asym. Unit
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Asym.Unit (28 KB)
Biol.Unit 1 (45 KB)
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(1)
Title
:
THE TETRAMER STRUCTURE OF THE NERVY HOMOLGY TWO (NHR2) DOMAIN OF AML1-ETO IS CRITICAL FOR AML1-ETO'S ACTIVITY
Authors
:
Y. Liu, M. D. Cheney, M. Chruszcz, S. M. Lukasik, K. L. Hartman, T. M. Laue Z. Dauter, W. Minor, N. A. Speck, J. H. Bushweller
Date
:
23 Sep 04 (Deposition) - 04 Oct 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Nhr2, Eto, Aml1-Eto, Oncoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
Y. Liu, M. D. Cheney, J. J. Gaudet, M. Chruszcz, S. M. Lukasik, D. Sugiyama, J. Lary, J. Cole, Z. Dauter, W. Minor, N. A. Speck, J. H. Bushweller
The Tetramer Structure Of The Nervy Homology Two Domain, Nhr2, Is Critical For Aml1/Eto'S Activity
Cancer Cell V. 9 249 2006
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MSE
4
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_036321 (R55W, chain A/B, )
2: VAR_MTG8_HUMAN_CCDS6256_1_01 (R55W, chain A/B, )
3: VAR_036322 (R64W, chain A/B, )
4: VAR_MTG8_HUMAN_CCDS6256_1_02 (R64W, chain A/B, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_036321
R
386
W
MTG8_HUMAN
Unclassified
---
A/B
R
55
W
2
CancerSNP
VAR_MTG8_HUMAN_CCDS6256_1_01
*
R
386
W
MTG8_HUMAN
Disease (Colorectal cancer)
---
A/B
R
55
W
3
UniProt
VAR_036322
R
395
W
MTG8_HUMAN
Unclassified
---
A/B
R
64
W
4
CancerSNP
VAR_MTG8_HUMAN_CCDS6256_1_02
*
R
395
W
MTG8_HUMAN
Disease (Colorectal cancer)
---
A/B
R
64
W
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(2, 4)
Info
All Exons
Exon 1.18b (A:11-28 | B:11-28)
Exon 1.19 (A:29-69 | B:29-69)
View:
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All Exon Boundaries
1: Boundary 1.17b/1.18b
2: Boundary 1.18b/1.19
3: Boundary 1.19/1.21
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.6b
ENST00000265814
6b
ENSE00001297181
chr8:
93088364-93088193
172
MTG8_HUMAN
1-30
30
0
-
-
1.11l
ENST00000265814
11l
ENSE00001782570
chr8:
93029591-93029454
138
MTG8_HUMAN
30-76
47
0
-
-
1.12n
ENST00000265814
12n
ENSE00002197259
chr8:
93027048-93026807
242
MTG8_HUMAN
76-156
81
0
-
-
1.13c
ENST00000265814
13c
ENSE00001682869
chr8:
93023319-93023230
90
MTG8_HUMAN
157-186
30
0
-
-
1.14e
ENST00000265814
14e
ENSE00001706185
chr8:
93017525-93017344
182
MTG8_HUMAN
187-247
61
0
-
-
1.17b
ENST00000265814
17b
ENSE00001739575
chr8:
93004117-93003867
251
MTG8_HUMAN
247-331
85
0
-
-
1.18b
ENST00000265814
18b
ENSE00001770404
chr8:
92999200-92999115
86
MTG8_HUMAN
331-359
29
2
A:11-28
B:11-28
18
18
1.19
ENST00000265814
19
ENSE00001764658
chr8:
92998553-92998352
202
MTG8_HUMAN
360-427
68
2
A:29-69
B:29-69
41
41
1.21
ENST00000265814
21
ENSE00001658814
chr8:
92988201-92988133
69
MTG8_HUMAN
427-450
24
0
-
-
1.22c
ENST00000265814
22c
ENSE00001768415
chr8:
92983076-92982886
191
MTG8_HUMAN
450-513
64
0
-
-
1.23h
ENST00000265814
23h
ENSE00001226380
chr8:
92972745-92971152
1594
MTG8_HUMAN
514-604
91
0
-
-
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_NHR2_1wq6B01 (B:11-69)
1b: PFAM_NHR2_1wq6B02 (B:11-69)
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Clans
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)
Clan
:
no clan defined [family: NHR2]
(1)
Family
:
NHR2
(1)
Homo sapiens (Human)
(1)
1a
NHR2-1wq6B01
B:11-69
1b
NHR2-1wq6B02
B:11-69
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Asymmetric Unit 1
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