PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1WIE
Asym. Unit
Info
Asym.Unit (471 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE FIRST SH3 DOMAIN OF KIAA0318 PROTEIN
Authors
:
K. Inoue, F. Hayashi, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
28 May 04 (Deposition) - 28 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Beta Barrel, Rim-Binding Protein 2, Kiaa0318 Protein, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Inoue, F. Hayashi, S. Yokoyama
Solution Structure Of The First Sh3 Domain Of Kiaa0318 Protein
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SH3 (A:15-82|-|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH3
PS50002
Src homology 3 (SH3) domain profile.
RIMB2_HUMAN
167-234
848-916
952-1019
1
A:15-82
-
-
[
close PROSITE info
]
Exons
(4, 4)
Info
All Exons
Exon 1.5 (A:1-5 (gaps))
Exon 1.6 (A:6-25)
Exon 1.7 (A:25-62)
Exon 1.8 (A:62-96 (gaps))
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.4/1.5
2: Boundary 1.5/1.6
3: Boundary 1.6/1.7
4: Boundary 1.7/1.8
5: Boundary 1.8/1.9
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000261655
1
ENSE00001225399
chr12:
131002410-131002373
38
RIMB2_HUMAN
-
0
0
-
-
1.2
ENST00000261655
2
ENSE00001121163
chr12:
130991315-130991193
123
RIMB2_HUMAN
-
0
0
-
-
1.3
ENST00000261655
3
ENSE00002176189
chr12:
130963561-130963457
105
RIMB2_HUMAN
1-34
34
0
-
-
1.4
ENST00000261655
4
ENSE00001656454
chr12:
130941245-130941041
205
RIMB2_HUMAN
35-103
69
0
-
-
1.5
ENST00000261655
5
ENSE00000757527
chr12:
130935885-130935740
146
RIMB2_HUMAN
103-151
49
1
A:1-5 (gaps)
34
1.6
ENST00000261655
6
ENSE00000938260
chr12:
130934821-130934745
77
RIMB2_HUMAN
152-177
26
1
A:6-25
20
1.7
ENST00000261655
7
ENSE00000938261
chr12:
130929814-130929705
110
RIMB2_HUMAN
177-214
38
1
A:25-62
38
1.8
ENST00000261655
8
ENSE00000757523
chr12:
130927205-130926393
813
RIMB2_HUMAN
214-485
272
1
A:62-96 (gaps)
70
1.9
ENST00000261655
9
ENSE00000757521
chr12:
130923061-130922910
152
RIMB2_HUMAN
485-535
51
0
-
-
1.10
ENST00000261655
10
ENSE00000757520
chr12:
130921836-130921387
450
RIMB2_HUMAN
536-685
150
0
-
-
1.11
ENST00000261655
11
ENSE00000757519
chr12:
130919425-130919279
147
RIMB2_HUMAN
686-734
49
0
-
-
1.13
ENST00000261655
13
ENSE00000757518
chr12:
130912882-130912724
159
RIMB2_HUMAN
735-787
53
0
-
-
1.14
ENST00000261655
14
ENSE00000757517
chr12:
130907106-130906998
109
RIMB2_HUMAN
788-824
37
0
-
-
1.15
ENST00000261655
15
ENSE00000757516
chr12:
130898851-130898670
182
RIMB2_HUMAN
824-884
61
0
-
-
1.16
ENST00000261655
16
ENSE00000903693
chr12:
130897332-130897164
169
RIMB2_HUMAN
885-941
57
0
-
-
1.17
ENST00000261655
17
ENSE00000903691
chr12:
130892374-130892271
104
RIMB2_HUMAN
941-975
35
0
-
-
1.18
ENST00000261655
18
ENSE00000757511
chr12:
130890788-130890717
72
RIMB2_HUMAN
976-999
24
0
-
-
1.19
ENST00000261655
19
ENSE00000903689
chr12:
130884358-130884224
135
RIMB2_HUMAN
1000-1044
45
0
-
-
1.20
ENST00000261655
20
ENSE00001425478
chr12:
130883706-130880682
3025
RIMB2_HUMAN
1045-1052
8
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1wiea_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
SH3-domain
(369)
Family
:
SH3-domain
(255)
Protein domain
:
RIM binding protein 2, RIMBP2
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1wiea_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_SH3_2_1wieA01 (A:20-80)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
SH3
(175)
Family
:
SH3_2
(30)
Homo sapiens (Human)
(20)
1a
SH3_2-1wieA01
A:20-80
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (471 KB)
Header - Asym.Unit
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1WIE
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
