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1WG1
Asym. Unit
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Asym.Unit (455 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN BAB13405(HOMOLOG EXC-7)
Authors
:
K. Tsuda, Y. Muto, T. Nagata, S. Suzuki, T. Someya, T. Kigawa, T. Terada, M. Shirouzu, M. Inoue, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
27 May 04 (Deposition) - 27 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Rbd, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Tsuda, Y. Muto, T. Nagata, S. Suzuki, T. Someya, T. Kigawa, T. Terada, M. Shirouzu, M. Inoue, S. Yokoyama
Solution Structure Of Rna Binding Domain In Bab13405(Homolog Exc-7)
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RRM (A:168-177|A:97-166|-)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
RAVR2_HUMAN
142-220
69-140
231-309
2
A:168-177
A:97-166
-
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Exons
(3, 3)
Info
All Exons
Exon 1.1 (A:90-109 (gaps))
Exon 1.2 (A:110-132)
Exon 1.3a (A:132-177 (gaps))
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3a
4: Boundary 1.3a/1.4
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000294428
1
ENSE00002184781
chr1:
65210778-65211104
327
RAVR2_HUMAN
1-83
83
1
A:90-109 (gaps)
67
1.2
ENST00000294428
2
ENSE00001681312
chr1:
65234339-65234405
67
RAVR2_HUMAN
84-106
23
1
A:110-132
23
1.3a
ENST00000294428
3a
ENSE00001671384
chr1:
65243306-65243775
470
RAVR2_HUMAN
106-262
157
1
A:132-177 (gaps)
79
1.4
ENST00000294428
4
ENSE00001650476
chr1:
65247063-65247254
192
RAVR2_HUMAN
263-326
64
0
-
-
1.5
ENST00000294428
5
ENSE00001065196
chr1:
65255071-65255197
127
RAVR2_HUMAN
327-369
43
0
-
-
1.6
ENST00000294428
6
ENSE00001065199
chr1:
65268659-65268744
86
RAVR2_HUMAN
369-397
29
0
-
-
1.7a
ENST00000294428
7a
ENSE00001454278
chr1:
65270417-65270521
105
RAVR2_HUMAN
398-432
35
0
-
-
1.8
ENST00000294428
8
ENSE00001065207
chr1:
65270674-65270788
115
RAVR2_HUMAN
433-471
39
0
-
-
1.9
ENST00000294428
9
ENSE00001065203
chr1:
65272889-65273157
269
RAVR2_HUMAN
471-560
90
0
-
-
1.10a
ENST00000294428
10a
ENSE00001685144
chr1:
65278421-65278532
112
RAVR2_HUMAN
561-598
38
0
-
-
1.11a
ENST00000294428
11a
ENSE00001179004
chr1:
65280387-65280523
137
RAVR2_HUMAN
598-643
46
0
-
-
1.12a
ENST00000294428
12a
ENSE00001065211
chr1:
65296522-65298912
2391
RAVR2_HUMAN
644-691
48
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1wg1a_ (A:)
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)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
Canonical RBD
(214)
Protein domain
:
Probable RNA-binding protein KIAA1579
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1wg1a_
A:
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CATH Domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_RRM_6_1wg1A01 (A:97-159)
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Clans
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Clan
:
RRM
(206)
Family
:
RRM_6
(14)
Homo sapiens (Human)
(12)
1a
RRM_6-1wg1A01
A:97-159
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Asymmetric Unit 1
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