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1WFQ
Asym. Unit
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Asym.Unit (443 KB)
Biol.Unit 1 (24 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE FIRST COLD-SHOCK DOMAIN OF THE HUMAN KIAA0885 PROTEIN (UNR PROTEIN)
Authors
:
A. K. Goroncy, T. Kigawa, S. Koshiba, T. Tomizawa, N. Kobayashi, N. Toch M. Inoue, S. Yokoyama, Riken Structural Genomics/Proteomics Ini (Rsgi)
Date
:
26 May 04 (Deposition) - 26 Nov 04 (Release) - 01 Sep 10 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Biol. Unit 1: A (1x)
Keywords
:
Beta-Barrel, Translational Regulation, Rna Chaperone, Rna/Dna Binding, Qb Fold, Greek-Key Topology, Unr Protein, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Rna Binding Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. K. Goroncy, S. Koshiba, N. Tochio, T. Tomizawa, M. Inoue, S. Watanabe, T. Harada, A. Tanaka, O. Ohara, T. Kigawa, S. Yokoyama
The Nmr Solution Structures Of The Five Constituent Cold-Shock Domains (Csd) Of The Human Unr (Upstream Of N-Ras) Protein.
J. Struct. Funct. Genom. V. 11 181 2010
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: COLD_SHOCK (A:30-49|-|-|-)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COLD_SHOCK
PS00352
'Cold-shock' domain signature.
CSDE1_HUMAN
37-56
197-216
360-379
530-549
1
A:30-49
-
-
-
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Exons
(3, 3)
Info
All Exons
Exon 1.8c (A:1-60)
Exon 1.9b (A:60-84)
Exon 1.10 (A:85-89 (gaps))
View:
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All Exon Boundaries
1: Boundary 1.4b/1.8c
2: Boundary 1.8c/1.9b
3: Boundary 1.9b/1.10
4: Boundary 1.10/1.11
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2h
ENST00000358528
2h
ENSE00001828752
chr1:
115300585-115300546
40
CSDE1_HUMAN
-
0
0
-
-
1.4b
ENST00000358528
4b
ENSE00001337441
chr1:
115292828-115292442
387
CSDE1_HUMAN
-
0
0
-
-
1.8c
ENST00000358528
8c
ENSE00001713511
chr1:
115282511-115282313
199
CSDE1_HUMAN
1-67
67
1
A:1-60
60
1.9b
ENST00000358528
9b
ENSE00001151258
chr1:
115280693-115280584
110
CSDE1_HUMAN
67-103
37
1
A:60-84
25
1.10
ENST00000358528
10
ENSE00000784321
chr1:
115280184-115280092
93
CSDE1_HUMAN
104-134
31
1
A:85-89 (gaps)
6
1.11
ENST00000358528
11
ENSE00002166908
chr1:
115279476-115279379
98
CSDE1_HUMAN
135-167
33
0
-
-
1.12
ENST00000358528
12
ENSE00001151239
chr1:
115277144-115277063
82
CSDE1_HUMAN
167-194
28
0
-
-
1.13
ENST00000358528
13
ENSE00000800122
chr1:
115276738-115276610
129
CSDE1_HUMAN
195-237
43
0
-
-
1.14b
ENST00000358528
14b
ENSE00000784325
chr1:
115276478-115276353
126
CSDE1_HUMAN
238-279
42
0
-
-
1.15
ENST00000358528
15
ENSE00000800120
chr1:
115275437-115275225
213
CSDE1_HUMAN
280-350
71
0
-
-
1.16
ENST00000358528
16
ENSE00001386496
chr1:
115273269-115273129
141
CSDE1_HUMAN
351-397
47
0
-
-
1.17
ENST00000358528
17
ENSE00000784333
chr1:
115273043-115272879
165
CSDE1_HUMAN
398-452
55
0
-
-
1.18
ENST00000358528
18
ENSE00000800117
chr1:
115269711-115269604
108
CSDE1_HUMAN
453-488
36
0
-
-
1.19a
ENST00000358528
19a
ENSE00001450278
chr1:
115269007-115268832
176
CSDE1_HUMAN
489-547
59
0
-
-
1.20
ENST00000358528
20
ENSE00001151209
chr1:
115267954-115267842
113
CSDE1_HUMAN
547-585
39
0
-
-
1.21b
ENST00000358528
21b
ENSE00001151205
chr1:
115266623-115266504
120
CSDE1_HUMAN
585-625
41
0
-
-
1.22b
ENST00000358528
22b
ENSE00001151196
chr1:
115263338-115263160
179
CSDE1_HUMAN
625-684
60
0
-
-
1.23
ENST00000358528
23
ENSE00001196939
chr1:
115262363-115262200
164
CSDE1_HUMAN
685-739
55
0
-
-
1.24b
ENST00000358528
24b
ENSE00000784340
chr1:
115261366-115261234
133
CSDE1_HUMAN
739-783
45
0
-
-
1.25f
ENST00000358528
25f
ENSE00001374597
chr1:
115260837-115259538
1300
CSDE1_HUMAN
784-798
15
0
-
-
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SCOP Domains
(1, 1)
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1a: SCOP_d1wfqa_ (A:)
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All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
Nucleic acid-binding proteins
(590)
Family
:
Cold shock DNA-binding domain-like
(310)
Protein domain
:
Cold shock domain protein E1 (UNR)
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1wfqa_
A:
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CATH Domains
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_CSD_1wfqA01 (A:19-83)
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OB
(224)
Family
:
CSD
(10)
Homo sapiens (Human)
(5)
1a
CSD-1wfqA01
A:19-83
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Asymmetric Unit 1
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Asym.Unit (443 KB)
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