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1WDZ
Asym. Unit
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Asym.Unit (79 KB)
Biol.Unit 1 (75 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RCB DOMAIN OF IRSP53
Authors
:
K. Murayama, S. Suetsugu, A. Seto, M. Shirouzu, T. Takenawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
21 May 04 (Deposition) - 07 Jun 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.63
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Cellular Signaling Protein, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Murayama, S. Suetsugu, A. Seto, M. Shirouzu, T. Takenawa, S. Yokoyama
Crystal Structure Of Rcb Domain Of Irsp53
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(8, 16)
Info
All Exons
Exon 1.1c (A:2-18 | B:2-18)
Exon 1.2 (A:19-44 | B:19-44)
Exon 1.3 (A:44-73 | B:44-73)
Exon 1.4 (A:73-93 | B:73-93)
Exon 1.5b (A:94-117 | B:94-117)
Exon 1.6 (A:118-163 | B:118-163 (gaps))
Exon 1.8 (A:164-214 | B:164-214)
Exon 1.9 (A:215-232 | B:215-232)
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All Exon Boundaries
1: Boundary -/1.1c
2: Boundary 1.1c/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5b
6: Boundary 1.5b/1.6
7: Boundary 1.6/1.8
8: Boundary 1.8/1.9
9: Boundary 1.9/1.10
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000321300
1c
ENSE00001380542
chr17:
79008962-79009108
147
BAIP2_HUMAN
1-18
18
2
A:2-18
B:2-18
17
17
1.2
ENST00000321300
2
ENSE00001262168
chr17:
79027468-79027543
76
BAIP2_HUMAN
19-44
26
2
A:19-44
B:19-44
26
26
1.3
ENST00000321300
3
ENSE00001262156
chr17:
79031681-79031767
87
BAIP2_HUMAN
44-73
30
2
A:44-73
B:44-73
30
30
1.4
ENST00000321300
4
ENSE00001262308
chr17:
79058632-79058693
62
BAIP2_HUMAN
73-93
21
2
A:73-93
B:73-93
21
21
1.5b
ENST00000321300
5b
ENSE00001262060
chr17:
79059454-79059525
72
BAIP2_HUMAN
94-117
24
2
A:94-117
B:94-117
24
24
1.6
ENST00000321300
6
ENSE00001262138
chr17:
79060243-79060380
138
BAIP2_HUMAN
118-163
46
2
A:118-163
B:118-163 (gaps)
46
46
1.8
ENST00000321300
8
ENSE00001262131
chr17:
79073728-79073880
153
BAIP2_HUMAN
164-214
51
2
A:164-214
B:164-214
51
51
1.9
ENST00000321300
9
ENSE00001262122
chr17:
79077302-79077523
222
BAIP2_HUMAN
215-288
74
2
A:215-232
B:215-232
18
18
1.10
ENST00000321300
10
ENSE00001262113
chr17:
79077707-79077908
202
BAIP2_HUMAN
289-356
68
0
-
-
1.11
ENST00000321300
11
ENSE00001262052
chr17:
79078314-79078515
202
BAIP2_HUMAN
356-423
68
0
-
-
1.12
ENST00000321300
12
ENSE00001262105
chr17:
79079878-79079946
69
BAIP2_HUMAN
423-446
24
0
-
-
1.13
ENST00000321300
13
ENSE00001262100
chr17:
79080545-79080707
163
BAIP2_HUMAN
446-500
55
0
-
-
1.14
ENST00000321300
14
ENSE00001262093
chr17:
79082275-79082309
35
BAIP2_HUMAN
501-512
12
0
-
-
1.17a
ENST00000321300
17a
ENSE00001262042
chr17:
79089570-79089617
48
BAIP2_HUMAN
512-528
17
0
-
-
1.17d
ENST00000321300
17d
ENSE00001262211
chr17:
79090030-79091232
1203
BAIP2_HUMAN
528-552
25
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1wdza1 (A:2-228)
1b: SCOP_d1wdzb_ (B:)
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Class
:
All alpha proteins
(14657)
Fold
:
BAR/IMD domain-like
(27)
Superfamily
:
BAR/IMD domain-like
(27)
Family
:
IMD domain
(3)
Protein domain
:
BAP2/IRSp53 N-terminal domain
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1wdza1
A:2-228
1b
d1wdzb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1wdzA00 (A:2-232)
1b: CATH_1wdzB00 (B:2-232)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Substrate Binding Domain Of Dnak; Chain:A; Domain 2
(103)
Homologous Superfamily
:
Bai1-associated protein 2 isoform 1
(2)
Human (Homo sapiens)
(2)
1a
1wdzA00
A:2-232
1b
1wdzB00
B:2-232
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_IMD_1wdzB01 (B:17-228)
1b: PFAM_IMD_1wdzB02 (B:17-228)
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Clan
:
Golgi-transport
(12)
Family
:
IMD
(2)
Homo sapiens (Human)
(2)
1a
IMD-1wdzB01
B:17-228
1b
IMD-1wdzB02
B:17-228
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Asym.Unit (79 KB)
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