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1WAO
Asym. Unit
Info
Asym.Unit (312 KB)
Biol.Unit 1 (80 KB)
Biol.Unit 2 (80 KB)
Biol.Unit 3 (80 KB)
Biol.Unit 4 (80 KB)
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(1)
Title
:
PP5 STRUCTURE
Authors
:
D. Barford
Date
:
27 Oct 04 (Deposition) - 22 Feb 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : 1,2,3,4
Biol. Unit 1: 1 (1x)
Biol. Unit 2: 2 (1x)
Biol. Unit 3: 3 (1x)
Biol. Unit 4: 4 (1x)
Keywords
:
Hydrolase, Phosphatase, Protein-Protein Interactions, Tpr, Super-Helix, X-Ray Structure
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Yang, S. M. Roe, M. J. Cliff, M. A. Williams, J. E. Ladbury, P. T. Cohen, D. Barford
Molecular Basis For Tpr Domain-Mediated Regulation Of Protein Phosphatase 5
Embo J. V. 24 1 2005
[
close entry info
]
Hetero Components
(1, 8)
Info
All Hetero Components
1a: MANGANESE (II) ION (MNa)
1b: MANGANESE (II) ION (MNb)
1c: MANGANESE (II) ION (MNc)
1d: MANGANESE (II) ION (MNd)
1e: MANGANESE (II) ION (MNe)
1f: MANGANESE (II) ION (MNf)
1g: MANGANESE (II) ION (MNg)
1h: MANGANESE (II) ION (MNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MN
8
Ligand/Ion
MANGANESE (II) ION
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP 1:271 , ASN 1:303 , HIS 1:352 , HIS 1:427 , MN 1:602
BINDING SITE FOR RESIDUE MN 1 601
2
AC2
SOFTWARE
ASP 1:242 , HIS 1:244 , ASP 1:271 , TYR 1:451 , MN 1:601
BINDING SITE FOR RESIDUE MN 1 602
3
AC3
SOFTWARE
ASP 2:242 , ASP 2:271 , ASN 2:303 , HIS 2:352 , HIS 2:427 , MN 2:602
BINDING SITE FOR RESIDUE MN 2 601
4
AC4
SOFTWARE
ASP 2:242 , HIS 2:244 , ASP 2:271 , MN 2:601
BINDING SITE FOR RESIDUE MN 2 602
5
AC5
SOFTWARE
ASP 3:242 , ASP 3:271 , ASN 3:303 , HIS 3:352 , HIS 3:427 , MN 3:602
BINDING SITE FOR RESIDUE MN 3 601
6
AC6
SOFTWARE
ASP 3:242 , HIS 3:244 , ASP 3:271 , TYR 3:451 , MN 3:601
BINDING SITE FOR RESIDUE MN 3 602
7
AC7
SOFTWARE
ASP 4:242 , ASP 4:271 , ASN 4:303 , HIS 4:352 , HIS 4:427 , MN 4:602
BINDING SITE FOR RESIDUE MN 4 601
8
AC8
SOFTWARE
GLU 4:76 , ASP 4:242 , HIS 4:244 , ASP 4:271 , ARG 4:275 , MN 4:601
BINDING SITE FOR RESIDUE MN 4 602
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 20)
Info
All PROSITE Patterns/Profiles
1: TPR (1:28-61,2:28-61,3:28-61,4:28-61|1:...)
2: TPR_REGION (1:28-129,2:28-129,3:28-129,4:28-12...)
3: SER_THR_PHOSPHATASE (1:300-305,2:300-305,3:300-305,4:30...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TPR
PS50005
TPR repeat profile.
PPP5_HUMAN
28-61
62-95
96-129
12
1:28-61
2:28-61
3:28-61
4:28-61
1:62-95
2:62-95
3:62-95
4:62-95
1:96-129
2:96-129
3:96-129
4:96-129
2
TPR_REGION
PS50293
TPR repeat region circular profile.
PPP5_HUMAN
28-129
4
1:28-129
2:28-129
3:28-129
4:28-129
3
SER_THR_PHOSPHATASE
PS00125
Serine/threonine specific protein phosphatases signature.
PPP5_HUMAN
300-305
4
1:300-305
2:300-305
3:300-305
4:300-305
[
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]
Exons
(13, 52)
Info
All Exons
Exon 1.1a (1:23-41 | 2:23-41 | 3:23-41 | 4:23...)
Exon 1.2b (1:41-121 | 2:41-121 | 3:41-121 | 4...)
Exon 1.3b (1:122-171 (gaps) | 2:122-171 (gaps...)
Exon 1.4a (1:171-211 | 2:171-211 | 3:171-211 ...)
Exon 1.5f (1:212-233 | 2:212-233 | 3:212-233 ...)
Exon 1.5h (1:234-266 | 2:234-266 | 3:234-266 ...)
Exon 1.6b (1:267-302 | 2:267-302 | 3:267-302 ...)
Exon 1.7c (1:302-349 | 2:302-349 | 3:302-349 ...)
Exon 1.8a (1:350-379 | 2:350-379 | 3:350-379 ...)
Exon 1.8e (1:379-392 | 2:379-392 | 3:379-392 ...)
Exon 1.8g (1:393-452 | 2:393-452 | 3:393-452 ...)
Exon 1.9a (1:452-479 | 2:452-479 | 3:452-479 ...)
Exon 1.9h (1:480-499 | 2:480-497 | 3:480-499 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.2b
03: Boundary 1.2b/1.3b
04: Boundary 1.3b/1.4a
05: Boundary 1.4a/1.5f
06: Boundary 1.5f/1.5h
07: Boundary 1.5h/1.6b
08: Boundary 1.6b/1.7c
09: Boundary 1.7c/1.8a
10: Boundary 1.8a/1.8e
11: Boundary 1.8e/1.8g
12: Boundary 1.8g/1.9a
13: Boundary 1.9a/1.9h
14: Boundary 1.9h/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000012443
1a
ENSE00001134741
chr19:
46850251-46850474
224
PPP5_HUMAN
1-41
41
4
1:23-41
2:23-41
3:23-41
4:23-41
19
19
19
19
1.2b
ENST00000012443
2b
ENSE00001656217
chr19:
46857005-46857246
242
PPP5_HUMAN
41-121
81
4
1:41-121
2:41-121
3:41-121
4:41-121
81
81
81
81
1.3b
ENST00000012443
3b
ENSE00001774243
chr19:
46878861-46879008
148
PPP5_HUMAN
122-171
50
4
1:122-171 (gaps)
2:122-171 (gaps)
3:122-171 (gaps)
4:122-171 (gaps)
50
50
50
50
1.4a
ENST00000012443
4a
ENSE00001752760
chr19:
46879710-46879831
122
PPP5_HUMAN
171-211
41
4
1:171-211
2:171-211
3:171-211
4:171-211
41
41
41
41
1.5f
ENST00000012443
5f
ENSE00001235477
chr19:
46886668-46886733
66
PPP5_HUMAN
212-233
22
4
1:212-233
2:212-233
3:212-233
4:212-233
22
22
22
22
1.5h
ENST00000012443
5h
ENSE00000714122
chr19:
46887037-46887135
99
PPP5_HUMAN
234-266
33
4
1:234-266
2:234-266
3:234-266
4:234-266
33
33
33
33
1.6b
ENST00000012443
6b
ENSE00000714127
chr19:
46888061-46888166
106
PPP5_HUMAN
267-302
36
4
1:267-302
2:267-302
3:267-302
4:267-302
36
36
36
36
1.7c
ENST00000012443
7c
ENSE00000714132
chr19:
46890350-46890492
143
PPP5_HUMAN
302-349
48
4
1:302-349
2:302-349
3:302-349
4:302-349
48
48
48
48
1.8a
ENST00000012443
8a
ENSE00000714135
chr19:
46890623-46890710
88
PPP5_HUMAN
350-379
30
4
1:350-379
2:350-379
3:350-379
4:350-379
30
30
30
30
1.8e
ENST00000012443
8e
ENSE00000714138
chr19:
46891665-46891705
41
PPP5_HUMAN
379-392
14
4
1:379-392
2:379-392
3:379-392
4:379-392
14
14
14
14
1.8g
ENST00000012443
8g
ENSE00000714141
chr19:
46891810-46891988
179
PPP5_HUMAN
393-452
60
4
1:393-452
2:393-452
3:393-452
4:393-452
60
60
60
60
1.9a
ENST00000012443
9a
ENSE00000714144
chr19:
46893308-46893389
82
PPP5_HUMAN
452-479
28
4
1:452-479
2:452-479
3:452-479
4:452-479
28
28
28
28
1.9h
ENST00000012443
9h
ENSE00001510079
chr19:
46893541-46894109
569
PPP5_HUMAN
480-499
20
4
1:480-499
2:480-497
3:480-499
4:480-494
20
18
20
15
[
close EXON info
]
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1wao11 (1:23-175)
1b: SCOP_d1wao21 (2:23-175)
1c: SCOP_d1wao31 (3:23-175)
1d: SCOP_d1wao41 (4:23-175)
2a: SCOP_d1wao12 (1:176-499)
2b: SCOP_d1wao22 (2:176-497)
2c: SCOP_d1wao32 (3:176-499)
2d: SCOP_d1wao42 (4:176-494)
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(
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
TPR-like
(83)
Family
:
Tetratricopeptide repeat (TPR)
(47)
Protein domain
:
Protein phosphatase 5
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1wao11
1:23-175
1b
d1wao21
2:23-175
1c
d1wao31
3:23-175
1d
d1wao41
4:23-175
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-dependent phosphatases
(115)
Superfamily
:
Metallo-dependent phosphatases
(115)
Family
:
Protein serine/threonine phosphatase
(50)
Protein domain
:
Serine/threonine protein phosphatase 5, PP5
(10)
Human (Homo sapiens) [TaxId: 9606]
(10)
2a
d1wao12
1:176-499
2b
d1wao22
2:176-497
2c
d1wao32
3:176-499
2d
d1wao42
4:176-494
[
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]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1wao402 (4:151-494)
1b: CATH_1wao202 (2:151-497)
1c: CATH_1wao102 (1:151-499)
1d: CATH_1wao302 (3:151-499)
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(
)
(
)
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(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Purple Acid Phosphatase; chain A, domain 2
(87)
Homologous Superfamily
:
[code=3.60.21.10, no name defined]
(83)
Human (Homo sapiens)
(36)
1a
1wao402
4:151-494
1b
1wao202
2:151-497
1c
1wao102
1:151-499
1d
1wao302
3:151-499
[
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Pfam Domains
(3, 16)
Info
all PFAM domains
1a: PFAM_Metallophos_1wao401 (4:235-431)
1b: PFAM_Metallophos_1wao402 (4:235-431)
1c: PFAM_Metallophos_1wao403 (4:235-431)
1d: PFAM_Metallophos_1wao404 (4:235-431)
2a: PFAM_PPP5_1wao405 (4:135-229)
2b: PFAM_PPP5_1wao406 (4:135-229)
2c: PFAM_PPP5_1wao407 (4:135-229)
2d: PFAM_PPP5_1wao408 (4:135-229)
3a: PFAM_TPR_1_1wao409 (4:96-129)
3b: PFAM_TPR_1_1wao410 (4:96-129)
3c: PFAM_TPR_1_1wao411 (4:96-129)
3d: PFAM_TPR_1_1wao412 (4:96-129)
3e: PFAM_TPR_1_1wao413 (4:96-129)
3f: PFAM_TPR_1_1wao414 (4:96-129)
3g: PFAM_TPR_1_1wao415 (4:96-129)
3h: PFAM_TPR_1_1wao416 (4:96-129)
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Clans
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)
Organisms
(
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(
)
Clan
:
Calcineurin
(56)
Family
:
Metallophos
(45)
Homo sapiens (Human)
(15)
1a
Metallophos-1wao401
4:235-431
1b
Metallophos-1wao402
4:235-431
1c
Metallophos-1wao403
4:235-431
1d
Metallophos-1wao404
4:235-431
Clan
:
TPR
(230)
Family
:
PPP5
(1)
Homo sapiens (Human)
(1)
2a
PPP5-1wao405
4:135-229
2b
PPP5-1wao406
4:135-229
2c
PPP5-1wao407
4:135-229
2d
PPP5-1wao408
4:135-229
Family
:
TPR_1
(18)
Homo sapiens (Human)
(11)
3a
TPR_1-1wao409
4:96-129
3b
TPR_1-1wao410
4:96-129
3c
TPR_1-1wao411
4:96-129
3d
TPR_1-1wao412
4:96-129
3e
TPR_1-1wao413
4:96-129
3f
TPR_1-1wao414
4:96-129
3g
TPR_1-1wao415
4:96-129
3h
TPR_1-1wao416
4:96-129
[
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