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1W7P
Asym. Unit
Info
Asym.Unit (131 KB)
Biol.Unit 1 (121 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF ENDOSOMAL COMPLEX ESCRT-II (VPS22/VPS25/VPS36)
Authors
:
H. Teo, O. Perisic, B. Gonzalez, R. L. Williams
Date
:
07 Sep 04 (Deposition) - 29 Sep 04 (Release) - 05 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Escrt-Ii Complex, Endosomal Protein Sorting, Protein Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Teo, O. Perisic, B. Gonzalez, R. L. Williams
Escrt-Ii, An Endosome-Associated Complex Required For Protein Sorting: Crystal Structure And Interactions With Escrt-Iii And Membranes
Dev. Cell V. 7 559 2004
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sorry, no Info available
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(3, 4)
Info
All Exons
Exon 1.1 (B:1-199 (gaps) | C:1-199 (gaps))
Exon 2.1 (D:396-566)
Exon 3.1 (A:20-232)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
3: Boundary -/2.1
4: Boundary 2.1/-
5: Boundary -/3.1
6: Boundary 3.1/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YJR102C
1
YJR102C.1
X:619754-619146
609
VPS25_YEAST
1-202
202
2
B:1-199 (gaps)
C:1-199 (gaps)
199
199
2.1
YLR417W
1
YLR417W.1
XII:955007-956707
1701
VPS36_YEAST
1-566
566
1
D:396-566
171
3.1
YPL002C
1
YPL002C.1
XVI:554325-553624
702
SNF8_YEAST
1-233
233
1
A:20-232
213
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SCOP Domains
(3, 8)
Info
All SCOP Domains
1a: SCOP_d1w7pb1 (B:1-125)
1b: SCOP_d1w7pb2 (B:126-199)
1c: SCOP_d1w7pc1 (C:1-125)
1d: SCOP_d1w7pc2 (C:126-199)
2a: SCOP_d1w7pd1 (D:396-489)
2b: SCOP_d1w7pd2 (D:490-566)
3a: SCOP_d1w7pa1 (A:20-164)
3b: SCOP_d1w7pa2 (A:165-232)
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Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
Vacuolar sorting protein domain
(7)
Protein domain
:
Vacuolar protein sorting-associated protein VPS25
(3)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(3)
1a
d1w7pb1
B:1-125
1b
d1w7pb2
B:126-199
1c
d1w7pc1
C:1-125
1d
d1w7pc2
C:126-199
Protein domain
:
Vacuolar protein sorting-associated protein VPS36
(2)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(2)
2a
d1w7pd1
D:396-489
2b
d1w7pd2
D:490-566
Protein domain
:
Vacuolar sorting protein SNF8
(2)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(2)
3a
d1w7pa1
A:20-164
3b
d1w7pa2
A:165-232
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1w7pB01 (B:1-125)
1b: CATH_1w7pC01 (C:1-125)
2a: CATH_1w7pA02 (A:87-161)
2b: CATH_1w7pB02 (B:126-199)
2c: CATH_1w7pC02 (C:126-199)
2d: CATH_1w7pD01 (D:406-490)
2e: CATH_1w7pD02 (D:491-559)
2f: CATH_1w7pA03 (A:162-232)
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Organisms
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)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'Winged helix' DNA-binding domain. Chain C. Domain 1
(5)
Baker's yeast (Saccharomyces cerevisiae)
(3)
1a
1w7pB01
B:1-125
1b
1w7pC01
C:1-125
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
Baker's yeast (Saccharomyces cerevisiae)
(8)
2a
1w7pA02
A:87-161
2b
1w7pB02
B:126-199
2c
1w7pC02
C:126-199
2d
1w7pD01
D:406-490
2e
1w7pD02
D:491-559
2f
1w7pA03
A:162-232
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_EAP30_1w7pA01 (A:20-214)
1b: PFAM_EAP30_1w7pD01 (D:396-548)
2a: PFAM_ESCRT_II_1w7pC01 (C:6-171)
2b: PFAM_ESCRT_II_1w7pC02 (C:6-171)
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Clan
:
no clan defined [family: EAP30]
(2)
Family
:
EAP30
(2)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(1)
1a
EAP30-1w7pA01
A:20-214
1b
EAP30-1w7pD01
D:396-548
Clan
:
no clan defined [family: ESCRT-II]
(3)
Family
:
ESCRT-II
(3)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(2)
2a
ESCRT-II-1w7pC01
C:6-171
2b
ESCRT-II-1w7pC02
C:6-171
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Asym.Unit (131 KB)
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