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1W63
Biol. Unit 4
Info
Asym.Unit (1.5 MB)
Biol.Unit 1 (267 KB)
Biol.Unit 2 (267 KB)
Biol.Unit 3 (268 KB)
Biol.Unit 4 (267 KB)
Biol.Unit 5 (267 KB)
Biol.Unit 6 (266 KB)
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(1)
Title
:
AP1 CLATHRIN ADAPTOR CORE
Authors
:
E. Heldwein, E. Macia, J. Wang, H. L. Yin, T. Kirchhausen, S. C. Harrison
Date
:
12 Aug 04 (Deposition) - 21 Sep 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
4.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X
Biol. Unit 1: A,B,M,S (1x)
Biol. Unit 2: C,D,N,T (1x)
Biol. Unit 3: E,F,O,U (1x)
Biol. Unit 4: I,J,R,X (1x)
Biol. Unit 5: K,L,V,W (1x)
Biol. Unit 6: G,H,P,Q (1x)
Keywords
:
Endocytosis, Clathrin Adaptor, Transport, Coated Pits
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Heldwein, E. Macia, J. Wang, H. L. Yin, T. Kirchhausen, S. C. Harrison
Crystal Structure Of The Clathrin Adaptor Protein 1 Core
Proc. Natl. Acad. Sci. Usa V. 101 14108 2004
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: CLAT_ADAPTOR_S (X:57-67)
2: CLAT_ADAPTOR_M_1 (R:157-177)
3: MHD (R:168-421)
4: CLAT_ADAPTOR_M_2 (R:253-267)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CLAT_ADAPTOR_S
PS00989
Clathrin adaptor complexes small chain signature.
AP1S1_MOUSE
57-67
1
-
-
-
-
-
X:57-67
2
CLAT_ADAPTOR_M_1
PS00990
Clathrin adaptor complexes medium chain signature 1.
AP1M1_MOUSE
157-177
1
-
-
-
-
R:157-177
-
3
MHD
PS51072
Mu homology domain (MHD) profile.
AP1M1_MOUSE
168-421
1
-
-
-
-
R:168-421
-
4
CLAT_ADAPTOR_M_2
PS00991
Clathrin adaptor complexes medium chain signature 2.
AP1M1_MOUSE
253-267
1
-
-
-
-
R:253-267
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 24)
Info
All SCOP Domains
1a: SCOP_d1w63a_ (A:)
1b: SCOP_d1w63b_ (B:)
1c: SCOP_d1w63k_ (K:)
1d: SCOP_d1w63l_ (L:)
1e: SCOP_d1w63m_ (M:)
1f: SCOP_d1w63n_ (N:)
1g: SCOP_d1w63o_ (O:)
1h: SCOP_d1w63p_ (P:)
1i: SCOP_d1w63q_ (Q:)
1j: SCOP_d1w63r_ (R:)
1k: SCOP_d1w63s_ (S:)
1l: SCOP_d1w63t_ (T:)
1m: SCOP_d1w63c_ (C:)
1n: SCOP_d1w63u_ (U:)
1o: SCOP_d1w63v_ (V:)
1p: SCOP_d1w63w_ (W:)
1q: SCOP_d1w63x_ (X:)
1r: SCOP_d1w63d_ (D:)
1s: SCOP_d1w63e_ (E:)
1t: SCOP_d1w63f_ (F:)
1u: SCOP_d1w63g_ (G:)
1v: SCOP_d1w63h_ (H:)
1w: SCOP_d1w63i_ (I:)
1x: SCOP_d1w63j_ (J:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Low resolution protein structures
(283)
Fold
:
clathrin assemblies
(3)
Superfamily
:
clathrin assemblies
(3)
Family
:
clathrin assemblies
(3)
Protein domain
:
AP1 clathrin adaptor core
(1)
Mouse (Mus musculus) [TaxId: 10090]
(1)
1a
d1w63a_
A:
1b
d1w63b_
B:
1c
d1w63k_
K:
1d
d1w63l_
L:
1e
d1w63m_
M:
1f
d1w63n_
N:
1g
d1w63o_
O:
1h
d1w63p_
P:
1i
d1w63q_
Q:
1j
d1w63r_
R:
1k
d1w63s_
S:
1l
d1w63t_
T:
1m
d1w63c_
C:
1n
d1w63u_
U:
1o
d1w63v_
V:
1p
d1w63w_
W:
1q
d1w63x_
X:
1r
d1w63d_
D:
1s
d1w63e_
E:
1t
d1w63f_
F:
1u
d1w63g_
G:
1v
d1w63h_
H:
1w
d1w63i_
I:
1x
d1w63j_
J:
[
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CATH Domains
(2, 18)
Info
all CATH domains
1a: CATH_1w63Q00 (Q:1-149)
1b: CATH_1w63M01 (M:2-145)
1c: CATH_1w63N01 (N:2-145)
1d: CATH_1w63O01 (O:2-145)
1e: CATH_1w63P01 (P:2-145)
1f: CATH_1w63R01 (R:2-145)
1g: CATH_1w63V01 (V:2-145)
1h: CATH_1w63S00 (S:1-149)
1i: CATH_1w63T00 (T:1-149)
1j: CATH_1w63U00 (U:1-149)
1k: CATH_1w63W00 (W:1-149)
1l: CATH_1w63X00 (X:1-149)
2a: CATH_1w63B00 (B:2-584)
2b: CATH_1w63D00 (D:2-584)
2c: CATH_1w63F00 (F:2-584)
2d: CATH_1w63H00 (H:2-584)
2e: CATH_1w63J00 (J:2-584)
2f: CATH_1w63L00 (L:2-584)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Beta-Lactamase
(202)
Homologous Superfamily
:
[code=3.30.450.60, no name defined]
(6)
Mouse (Mus musculus)
(3)
1a
1w63Q00
Q:1-149
1b
1w63M01
M:2-145
1c
1w63N01
N:2-145
1d
1w63O01
O:2-145
1e
1w63P01
P:2-145
1f
1w63R01
R:2-145
1g
1w63V01
V:2-145
1h
1w63S00
S:1-149
1i
1w63T00
T:1-149
1j
1w63U00
U:1-149
1k
1w63W00
W:1-149
1l
1w63X00
X:1-149
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Leucine-rich Repeat Variant
(77)
Homologous Superfamily
:
Leucine-rich Repeat Variant
(75)
Mouse (Mus musculus)
(10)
2a
1w63B00
B:2-584
2b
1w63D00
D:2-584
2c
1w63F00
F:2-584
2d
1w63H00
H:2-584
2e
1w63J00
J:2-584
2f
1w63L00
L:2-584
[
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Pfam Domains
(4, 30)
Info
all PFAM domains
1a: PFAM_Adap_comp_sub_1w63V01 (V:157-422)
1b: PFAM_Adap_comp_sub_1w63V02 (V:157-422)
1c: PFAM_Adap_comp_sub_1w63V03 (V:157-422)
1d: PFAM_Adap_comp_sub_1w63V04 (V:157-422)
1e: PFAM_Adap_comp_sub_1w63V05 (V:157-422)
1f: PFAM_Adap_comp_sub_1w63V06 (V:157-422)
2a: PFAM_Clat_adaptor_s_1w63V07 (V:2-141)
2b: PFAM_Clat_adaptor_s_1w63V08 (V:2-141)
2c: PFAM_Clat_adaptor_s_1w63V09 (V:2-141)
2d: PFAM_Clat_adaptor_s_1w63V10 (V:2-141)
2e: PFAM_Clat_adaptor_s_1w63V11 (V:2-141)
2f: PFAM_Clat_adaptor_s_1w63V12 (V:2-141)
2g: PFAM_Clat_adaptor_s_1w63X01 (X:1-142)
2h: PFAM_Clat_adaptor_s_1w63X02 (X:1-142)
2i: PFAM_Clat_adaptor_s_1w63X03 (X:1-142)
2j: PFAM_Clat_adaptor_s_1w63X04 (X:1-142)
2k: PFAM_Clat_adaptor_s_1w63X05 (X:1-142)
2l: PFAM_Clat_adaptor_s_1w63X06 (X:1-142)
3a: PFAM_Adaptin_N_1w63K01 (K:23-574)
3b: PFAM_Adaptin_N_1w63K02 (K:23-574)
3c: PFAM_Adaptin_N_1w63K03 (K:23-574)
3d: PFAM_Adaptin_N_1w63K04 (K:23-574)
3e: PFAM_Adaptin_N_1w63K05 (K:23-574)
3f: PFAM_Adaptin_N_1w63K06 (K:23-574)
4a: PFAM_Adaptin_N_1w63L01 (L:10-534)
4b: PFAM_Adaptin_N_1w63L02 (L:10-534)
4c: PFAM_Adaptin_N_1w63L03 (L:10-534)
4d: PFAM_Adaptin_N_1w63L04 (L:10-534)
4e: PFAM_Adaptin_N_1w63L05 (L:10-534)
4f: PFAM_Adaptin_N_1w63L06 (L:10-534)
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Clans
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)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Cargo_bd_muHD
(7)
Family
:
Adap_comp_sub
(7)
Mus musculus (Mouse)
(1)
1a
Adap_comp_sub-1w63V01
V:157-422
1b
Adap_comp_sub-1w63V02
V:157-422
1c
Adap_comp_sub-1w63V03
V:157-422
1d
Adap_comp_sub-1w63V04
V:157-422
1e
Adap_comp_sub-1w63V05
V:157-422
1f
Adap_comp_sub-1w63V06
V:157-422
Clan
:
SNARE
(6)
Family
:
Clat_adaptor_s
(5)
Mus musculus (Mouse)
(5)
2a
Clat_adaptor_s-1w63V07
V:2-141
2b
Clat_adaptor_s-1w63V08
V:2-141
2c
Clat_adaptor_s-1w63V09
V:2-141
2d
Clat_adaptor_s-1w63V10
V:2-141
2e
Clat_adaptor_s-1w63V11
V:2-141
2f
Clat_adaptor_s-1w63V12
V:2-141
2g
Clat_adaptor_s-1w63X01
X:1-142
2h
Clat_adaptor_s-1w63X02
X:1-142
2i
Clat_adaptor_s-1w63X03
X:1-142
2j
Clat_adaptor_s-1w63X04
X:1-142
2k
Clat_adaptor_s-1w63X05
X:1-142
2l
Clat_adaptor_s-1w63X06
X:1-142
Clan
:
TPR
(230)
Family
:
Adaptin_N
(5)
Mus musculus (Mouse)
(3)
3a
Adaptin_N-1w63K01
K:23-574
3b
Adaptin_N-1w63K02
K:23-574
3c
Adaptin_N-1w63K03
K:23-574
3d
Adaptin_N-1w63K04
K:23-574
3e
Adaptin_N-1w63K05
K:23-574
3f
Adaptin_N-1w63K06
K:23-574
Rattus norvegicus (Rat)
(3)
4a
Adaptin_N-1w63L01
L:10-534
4b
Adaptin_N-1w63L02
L:10-534
4c
Adaptin_N-1w63L03
L:10-534
4d
Adaptin_N-1w63L04
L:10-534
4e
Adaptin_N-1w63L05
L:10-534
4f
Adaptin_N-1w63L06
L:10-534
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Asym.Unit (1.5 MB)
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Biol.Unit 1 (267 KB)
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Biol.Unit 3 (268 KB)
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